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A
AccumulateCounts()
(in
rdkit.ML.EnrichPlot
)
AddChild()
(in
DecTreeNode
)
all_subgraph_extensions()
(in
rdkit.Chem.fmcs.fmcs
)
actCol
(in
RunDetails
)
AddChild()
(in
TreeNode
)
AllChem
(in
rdkit.Chem
)
ActFunc
(in
rdkit.ML.Neural.ActFuncs
)
AddChild()
(in
VLibNode
)
ALPHA
(in
rdkit.Chem.Features.ShowFeats
)
ActFuncs
(in
rdkit.ML.Neural
)
AddChildNode()
(in
TreeNode
)
amidePatt
(in
rdkit.Chem.SATIS
)
acyc_smarts
(in
rdkit.Chem.Fraggle.FraggleSim
)
AddChildren()
(in
Cluster
)
AnalyzeComposite
(in
rdkit.ML
)
add_new_match()
(in
SingleBestAtoms
)
addCircle()
(in
Canvas
)
AnalyzeSparseVects()
(in
rdkit.ML.InfoTheory.BitRank
)
add_new_match()
(in
SingleBestAtomsCompleteRingsOnly
)
AddColumn()
(in
DbConnect
)
apDict
(in
rdkit.Chem.Draw.SimilarityMaps
)
add_new_match()
(in
SingleBestBonds
)
AddExcludedVolumes()
(in
rdkit.Chem.Pharm3D.EmbedLib
)
AppendSkeletonPoints()
(in
rdkit.Chem.Subshape.BuilderUtils
)
add_new_match()
(in
SingleBestBondsCompleteRingsOnly
)
AddExclusion()
(in
FragmentMatcher
)
ArbAxisRotation()
(in
rdkit.Chem.Features.FeatDirUtilsRD
)
AddBit()
(in
BitEnsemble
)
AddFeatPoint()
(in
FeatMap
)
aromaticNTransform
(in
rdkit.Chem.Scaffolds.MurckoScaffold
)
addCanvasDashedWedge()
(in
Canvas
)
AddFeature()
(in
FeatMap
)
assign_isotopes_from_class_tag()
(in
rdkit.Chem.fmcs.fmcs
)
addCanvasDashedWedge()
(in
Canvas
)
AddModel()
(in
Composite
)
AssignBondOrdersFromTemplate()
(in
rdkit.Chem.AllChem
)
addCanvasDashedWedge()
(in
CanvasBase
)
AddMol()
(in
MolDrawing
)
AssignMolFeatsToPoints()
(in
rdkit.Chem.Subshape.BuilderUtils
)
addCanvasDashedWedge()
(in
Canvas
)
AddMoleculeColumnToFrame()
(in
rdkit.Chem.PandasTools
)
Atom
(in
rdkit.Chem.fmcs.fmcs
)
addCanvasDashedWedge()
(in
Canvas
)
AddMurckoToFrame()
(in
rdkit.Chem.PandasTools
)
atom_typer_any()
(in
rdkit.Chem.fmcs.fmcs
)
addCanvasDashedWedge()
(in
Canvas
)
AddParent()
(in
VLibNode
)
atom_typer_elements()
(in
rdkit.Chem.fmcs.fmcs
)
addCanvasLine()
(in
Canvas
)
AddParent()
(in
SupplyNode
)
atom_typer_isotopes()
(in
rdkit.Chem.fmcs.fmcs
)
addCanvasLine()
(in
Canvas
)
AddPharmacophore()
(in
MolViewer
)
atom_typers
(in
rdkit.Chem.fmcs.fmcs
)
addCanvasLine()
(in
CanvasBase
)
AddPharmacophore()
(in
MolViewer
)
atomCompare
(in
Default
)
addCanvasLine()
(in
Canvas
)
AddPoint()
(in
MLDataSet
)
atomContrib()
(in
rdkit.Chem.Fraggle.FraggleSim
)
addCanvasLine()
(in
Canvas
)
AddPoints()
(in
MLDataSet
)
atomLabelFontFace
(in
DrawingOptions
)
addCanvasLine()
(in
Canvas
)
AddSupplementalData()
(in
ModelPackage
)
atomLabelFontSize
(in
DrawingOptions
)
addCanvasPolygon()
(in
Canvas
)
AddTable()
(in
DbConnect
)
atomLabelMinFontSize
(in
DrawingOptions
)
addCanvasPolygon()
(in
Canvas
)
AddTree()
(in
Forest
)
atomNumberOffset
(in
DrawingOptions
)
addCanvasPolygon()
(in
CanvasBase
)
AddVect()
(in
VectCollection
)
AtomPairs
(in
rdkit.Chem
)
addCanvasPolygon()
(in
Canvas
)
AdjustComposite
(in
rdkit.ML.Composite
)
atomPs
(in
MolDrawing
)
addCanvasPolygon()
(in
Canvas
)
aggCanvas
(in
rdkit.Chem.Draw
)
AtomSmartsNoAromaticity
(in
rdkit.Chem.fmcs.fmcs
)
addCanvasPolygon()
(in
Canvas
)
aldehydePatt
(in
rdkit.Chem.SATIS
)
AtomTypes
(in
rdkit.Chem.EState
)
addCanvasText()
(in
Canvas
)
AlignDepict
(in
rdkit.Chem.ChemUtils
)
atsFilter
(in
rdkit.VLib.NodeLib.demo
)
addCanvasText()
(in
Canvas
)
AlignDepict()
(in
rdkit.Chem.ChemUtils.AlignDepict
)
Avalon
(in rdkit)
addCanvasText()
(in
CanvasBase
)
alignedConfId
(in
SubshapeAlignment
)
Average
(in
MergeMethod
)
addCanvasText()
(in
Canvas
)
AlignMol()
(in
rdkit.Chem.PandasTools
)
AverageErrors()
(in
Composite
)
addCanvasText()
(in
Canvas
)
AlignMolToTemplate2D()
(in
rdkit.Chem.TemplateAlign
)
AverageErrors()
(in
Forest
)
addCanvasText()
(in
Canvas
)
AlignToScaffold()
(in
rdkit.Chem.PandasTools
)
AddChild()
(in
Cluster
)
All
(in
FeatMapScoreMode
)
B
BackProp
(in
rdkit.ML.Neural.Trainers
)
BitRank
(in
rdkit.ML.InfoTheory
)
BuildCatalog()
(in
rdkit.Chem.BuildFragmentCatalog
)
BalabanJ()
(in
rdkit.Chem.GraphDescriptors
)
BitsInCommon()
(in
rdkit.Chem.AtomPairs.Utils
)
BuildComposite
(in
rdkit.ML
)
BalanceComposite()
(in
rdkit.ML.Composite.AdjustComposite
)
BitUtils
(in
rdkit.DataStructs
)
BuildDataSet()
(in
rdkit.ML.Data.DataUtils
)
BalanceComposite()
(in
rdkit.ML.GrowComposite
)
BitVect
(in
rdkit.DataStructs
)
BuilderUtils
(in
rdkit.Chem.Subshape
)
BayesComposite
(in
rdkit.ML.Composite
)
BitVect
(in
rdkit.DataStructs.BitVect
)
BuildFragmentCatalog
(in
rdkit.Chem
)
BayesComposite
(in
rdkit.ML.Composite.BayesComposite
)
blankExpr
(in
rdkit.Chem.PeriodicTable
)
BuildFuncGroupHierarchy()
(in
rdkit.Chem.FunctionalGroups
)
BayesCompositeToComposite()
(in
rdkit.ML.Composite.BayesComposite
)
Bond
(in
rdkit.Chem.fmcs.fmcs
)
BuildMorganFP()
(in
rdkit.Chem.MolDb.FingerprintUtils
)
BEGIN
(in
rdkit.Chem.Features.ShowFeats
)
bond_typer_any()
(in
rdkit.Chem.fmcs.fmcs
)
BuildPatts()
(in
rdkit.Chem.EState.AtomTypes
)
BertzCT()
(in
rdkit.Chem.GraphDescriptors
)
bond_typer_bondtypes()
(in
rdkit.Chem.fmcs.fmcs
)
BuildPharm2DFP()
(in
rdkit.Chem.MolDb.FingerprintUtils
)
Best
(in
FeatMapScoreMode
)
bond_typers
(in
rdkit.Chem.fmcs.fmcs
)
BuildQuantDataSet()
(in
rdkit.ML.Data.DataUtils
)
bgColor
(in
DrawingOptions
)
bondCompare
(in
Default
)
BuildQuantTree
(in
rdkit.ML.DecTree
)
biasList
(in
RunDetails
)
bondLineWidth
(in
DrawingOptions
)
BuildQuantTree()
(in
rdkit.ML.DecTree.BuildQuantTree
)
biggerTest
(in
rdkit.VLib.NodeLib.SmartsRemover
)
bondMatchers
(in
rdkit.Chem.BRICS
)
BuildRDKitFP()
(in
rdkit.Chem.MolDb.FingerprintUtils
)
binaryHolder
(in
rdkit.Dbase.DbModule
)
bondScaleFacts
(in
rdkit.Chem.MolSurf
)
BuildSigFactory()
(in
rdkit.Chem.MolDb.FingerprintUtils
)
binaryTypeName
(in
rdkit.Dbase.DbModule
)
Box
(in
FeatProfile
)
BuildSigTree
(in
rdkit.ML.DecTree
)
BinsTriangleInequality()
(in
rdkit.Chem.Pharm2D.Utils
)
BreakBRICSBonds()
(in
rdkit.Chem.BRICS
)
BuildSigTree()
(in
rdkit.ML.DecTree.BuildSigTree
)
BitClusterer
(in
rdkit.ML.InfoTheory
)
BRICS
(in
rdkit.Chem
)
BuildTorsionsFP()
(in
rdkit.Chem.MolDb.FingerprintUtils
)
BitClusterer
(in
rdkit.ML.InfoTheory.BitClusterer
)
BRICSBuild()
(in
rdkit.Chem.BRICS
)
BuildVoteImage()
(in
rdkit.ML.MLUtils.VoteImg
)
BitEnsemble
(in
rdkit.DataStructs
)
BRICSDecompose()
(in
rdkit.Chem.BRICS
)
BulkTester
(in
rdkit.Chem.ChemUtils
)
BitEnsemble
(in
rdkit.DataStructs.BitEnsemble
)
BuildAdjacencyList()
(in
rdkit.Chem.FragmentCatalog
)
BurgesRiskBound()
(in
rdkit.ML.SLT.Risk
)
BitEnsembleDb
(in
rdkit.DataStructs
)
BuildAtomDict()
(in
CompoundDescriptorCalculator
)
Butina
(in
rdkit.ML.Cluster
)
BitGainsInfo
(in
rdkit.Chem.FragmentCatalog
)
BuildAtomPairFP()
(in
rdkit.Chem.MolDb.FingerprintUtils
)
C
CachingTargetsMatcher
(in
rdkit.Chem.fmcs.fmcs
)
Chi1()
(in
rdkit.Chem.GraphDescriptors
)
COLOR
(in
rdkit.Chem.Features.ShowFeats
)
CactvsImageTransformer
(in
rdkit.Dbase.DbReport
)
Chi1n
(in
rdkit.Chem.GraphDescriptors
)
colorBonds
(in
DrawingOptions
)
cairoCanvas
(in
rdkit.Chem.Draw
)
Chi1v
(in
rdkit.Chem.GraphDescriptors
)
CombiEnum()
(in
rdkit.Chem.Pharm3D.EmbedLib
)
calcAtomGaussians()
(in
rdkit.Chem.Draw
)
Chi2n
(in
rdkit.Chem.GraphDescriptors
)
CombineFeatMaps()
(in
rdkit.Chem.FeatMaps.FeatMapUtils
)
CalcAUC()
(in
rdkit.ML.Scoring.Scoring
)
Chi2v
(in
rdkit.Chem.GraphDescriptors
)
CombineSubshapes()
(in
SubshapeBuilder
)
CalcBEDROC()
(in
rdkit.ML.Scoring.Scoring
)
Chi3n
(in
rdkit.Chem.GraphDescriptors
)
Commit()
(in
DbConnect
)
CalcCompoundDescriptorsForComposition()
(in
CompoundDescriptorCalculator
)
Chi3v
(in
rdkit.Chem.GraphDescriptors
)
Compare()
(in
Cluster
)
CalcDescriptors()
(in
DescriptorCalculator
)
Chi4n
(in
rdkit.Chem.GraphDescriptors
)
compare_shortcuts
(in
rdkit.Chem.fmcs.fmcs
)
CalcDescriptors()
(in
MolecularDescriptorCalculator
)
Chi4v
(in
rdkit.Chem.GraphDescriptors
)
completeRingsOnly
(in
Default
)
CalcDescriptorsForComposition()
(in
CompoundDescriptorCalculator
)
children
(in
FGHierarchyNode
)
Composite
(in
rdkit.ML
)
CalcEnrichment()
(in
rdkit.ML.Scoring.Scoring
)
children
(in
RecapHierarchyNode
)
Composite
(in
rdkit.ML.Composite
)
CalcEnrichment()
(in
rdkit.ML.ScreenComposite
)
ChiNn_
(in
rdkit.Chem.GraphDescriptors
)
Composite
(in
rdkit.ML.Composite.Composite
)
CalcGains()
(in
rdkit.Chem.BuildFragmentCatalog
)
ChiNv_
(in
rdkit.Chem.GraphDescriptors
)
CompositeRun
(in
rdkit.ML
)
CalcGainsFromFps()
(in
rdkit.Chem.BuildFragmentCatalog
)
ChooseOptimalRoot()
(in
rdkit.ML.DecTree.CrossValidate
)
CompositeRun
(in
rdkit.ML.CompositeRun
)
CalcInfoGains()
(in
rdkit.ML.InfoTheory.BitRank
)
circColor
(in
VisOpts
)
CompositeToBayesComposite()
(in
rdkit.ML.Composite.BayesComposite
)
CalcMetricMatrix()
(in
rdkit.ML.Cluster.Resemblance
)
circColor
(in
VisOpts
)
Compound
(in
rdkit.Chem.MolDb.Loader_sa
)
CalcMultipleCompoundsDescriptor()
(in
rdkit.ML.Descriptors.Parser
)
circRad
(in
VisOpts
)
CompoundDescriptorCalculator
(in
rdkit.ML.Descriptors.CompoundDescriptors
)
CalcNPossibleUsingMap()
(in
rdkit.ML.Data.DataUtils
)
circRad
(in
VisOpts
)
CompoundDescriptors
(in
rdkit.ML.Descriptors
)
CalcRIE()
(in
rdkit.ML.Scoring.Scoring
)
ClassificationError
(in
rdkit.ML.ModelPackage.Packager
)
compute_fraggle_similarity_for_subs()
(in
rdkit.Chem.Fraggle.FraggleSim
)
CalcROC()
(in
rdkit.ML.Scoring.Scoring
)
ClassificationModel
(in
rdkit.ML.NaiveBayes
)
compute_mcs()
(in
rdkit.Chem.fmcs.fmcs
)
CalcSimpleDescriptorsForComposition()
(in
CompoundDescriptorCalculator
)
Classify()
(in
ModelPackage
)
ComputeChiralVolume()
(in
rdkit.Chem.Pharm3D.EmbedLib
)
CalcSingleCompoundDescriptor()
(in
rdkit.ML.Descriptors.Parser
)
ClassifyExample()
(in
BayesComposite
)
ComputeGridIndices()
(in
rdkit.Chem.Subshape.BuilderUtils
)
CalcTotalEntropy()
(in
rdkit.ML.DecTree.ID3
)
ClassifyExample()
(in
Composite
)
ComputeMolShape()
(in
rdkit.Chem.AllChem
)
CalcTreeNodeSizes()
(in
rdkit.ML.DecTree.TreeVis
)
ClassifyExample()
(in
DecTreeNode
)
ComputeMolVolume()
(in
rdkit.Chem.AllChem
)
CalcTreeWidth()
(in
rdkit.ML.DecTree.TreeVis
)
ClassifyExample()
(in
Forest
)
ComputeShapeGridCentroid()
(in
rdkit.Chem.Subshape.BuilderUtils
)
CalculateDirectionsAtPoint()
(in
rdkit.Chem.Subshape.BuilderUtils
)
ClassifyExample()
(in
QuantTreeNode
)
connect
(in
rdkit.Dbase.DbModule
)
CalculateTFD()
(in
rdkit.Chem.TorsionFingerprints
)
ClassifyExample()
(in
SigTreeNode
)
ConstrainedEmbed()
(in
rdkit.Chem.AllChem
)
CalculateTorsionAngles()
(in
rdkit.Chem.TorsionFingerprints
)
ClassifyExample()
(in
KNNClassificationModel
)
ConstrainedEnum()
(in
rdkit.Chem.Pharm3D.EmbedLib
)
CalculateTorsionLists()
(in
rdkit.Chem.TorsionFingerprints
)
ClassifyExample()
(in
NaiveBayesClassifier
)
ConstructEnsembleBV()
(in
rdkit.DataStructs.BitUtils
)
CalculateTorsionWeights()
(in
rdkit.Chem.TorsionFingerprints
)
ClassifyExample()
(in
Network
)
ConstructNodes()
(in
Network
)
camera_type_3d
(in
rdkit.Chem.Draw.IPythonConsole
)
ClassifyExamples()
(in
NaiveBayesClassifier
)
ConstructRandomWeights()
(in
Network
)
CangenNode
(in
rdkit.Chem.fmcs.fmcs
)
ClearExamples()
(in
DecTreeNode
)
ConstructSidechains()
(in
rdkit.Chem.ChemUtils.TemplateExpand
)
canon()
(in
rdkit.Chem.fmcs.fmcs
)
ClearModelExamples()
(in
Composite
)
container
(in
pySparseIntVect
)
CanonSmiles()
(in
rdkit.Chem
)
CLINK
(in
rdkit.ML.Cluster.Murtagh
)
Convert()
(in
rdkit.Chem.ChemUtils.SDFToCSV
)
canvas
(in
MolDrawing
)
Closest
(in
FeatMapScoreMode
)
convert_input_to_typed_molecules()
(in
rdkit.Chem.fmcs.fmcs
)
Canvas
(in
rdkit.Chem.Draw.aggCanvas
)
Cluster
(in
rdkit.ML
)
convertColor()
(in
rdkit.Chem.Draw.aggCanvas
)
Canvas
(in
rdkit.Chem.Draw.cairoCanvas
)
Cluster
(in
rdkit.ML.Cluster.Clusters
)
convertColor()
(in
rdkit.Chem.Draw.spingCanvas
)
Canvas
(in
rdkit.Chem.Draw.mplCanvas
)
ClusterAlignments()
(in
rdkit.Chem.Subshape.SubshapeAligner
)
ConvertRows()
(in
rdkit.Chem.MolDb.Loader_orig
)
Canvas
(in
rdkit.Chem.Draw.qtCanvas
)
ClusterBits()
(in
BitClusterer
)
coordScale
(in
DrawingOptions
)
Canvas
(in
rdkit.Chem.Draw.spingCanvas
)
ClusterData()
(in
rdkit.ML.Cluster.Butina
)
CosineSimilarity()
(in
rdkit.Chem.AtomPairs.Utils
)
canvasbase
(in
rdkit.Chem.Draw
)
ClusterData()
(in
rdkit.ML.Cluster.Murtagh
)
countOptions
(in
rdkit.ML.Descriptors.CompoundDescriptors
)
CanvasBase
(in
rdkit.Chem.Draw.canvasbase
)
ClusterFromDetails()
(in
rdkit.Chem.Fingerprints.ClusterMols
)
CountResults()
(in
rdkit.ML.Data.DataUtils
)
canvasSize
(in
MolDrawing
)
ClusterMols
(in
rdkit.Chem.Fingerprints
)
CountUpTo()
(in
rdkit.Chem.Pharm2D.Utils
)
carboxylatePatt
(in
rdkit.Chem.SATIS
)
ClusterPoints()
(in
rdkit.Chem.Fingerprints.ClusterMols
)
CreateMolFingerprint()
(in
rdkit.Chem.FunctionalGroups
)
carboxylPatt
(in
rdkit.Chem.SATIS
)
ClusterRenderer
(in
rdkit.ML.Cluster.ClusterVis
)
Crippen
(in
rdkit.Chem
)
catalogName
(in
RunDetails
)
Clusters
(in
rdkit.ML.Cluster
)
CristianiRiskBound()
(in
rdkit.ML.SLT.Risk
)
CDXImageTransformer
(in
rdkit.Dbase.DbReport
)
ClusterTerminalPts()
(in
rdkit.Chem.Subshape.BuilderUtils
)
cross()
(in
rdkit.Chem.Features.FeatDirUtilsRD
)
CENTROID
(in
rdkit.ML.Cluster.Murtagh
)
ClusterToImg()
(in
rdkit.ML.Cluster.ClusterVis
)
CrossValidate
(in
rdkit.ML.DecTree
)
ChangeMoleculeRendering()
(in
rdkit.Chem.PandasTools
)
ClusterToPDF()
(in
rdkit.ML.Cluster.ClusterVis
)
CrossValidate
(in
rdkit.ML.KNN
)
CharacteristicPolynomial()
(in
rdkit.Chem.Graphs
)
ClusterToSVG()
(in
rdkit.ML.Cluster.ClusterVis
)
CrossValidate
(in
rdkit.ML.NaiveBayes
)
Check2DBounds()
(in
rdkit.Chem.Pharm3D.EmbedLib
)
ClusterUtils
(in
rdkit.ML.Cluster
)
CrossValidate
(in
rdkit.ML.Neural
)
check_completeRingsOnly()
(in
rdkit.Chem.fmcs.fmcs
)
ClusterVis
(in
rdkit.ML.Cluster
)
CrossValidate()
(in
rdkit.ML.DecTree.CrossValidate
)
CheckCanonicalization()
(in
rdkit.Chem.Randomize
)
CMIM
(in
rdkit.ML.DecTree.BuildSigTree
)
CrossValidate()
(in
rdkit.ML.KNN.CrossValidate
)
CheckForLinks()
(in
rdkit.Dbase.Pubmed.Searches
)
CMIM
(in
rdkit.ML.NaiveBayes.CrossValidate
)
CrossValidate()
(in
rdkit.ML.NaiveBayes.CrossValidate
)
Chem
(in rdkit)
CMPTOL
(in
rdkit.ML.Cluster.Clusters
)
CrossValidate()
(in
rdkit.ML.Neural.CrossValidate
)
ChemicalFeatures
(in
rdkit.Chem
)
coarseGridToleranceMult
(in
SubshapeAligner
)
CrossValidationDriver()
(in
rdkit.ML.DecTree.CrossValidate
)
ChemicalForceFields
(in
rdkit.Chem
)
CoarseScreenPharmacophore()
(in
rdkit.Chem.Pharm3D.EmbedLib
)
CrossValidationDriver()
(in
rdkit.ML.KNN.CrossValidate
)
ChemUtils
(in
rdkit.Chem
)
CollectDescriptorNames()
(in
rdkit.ML.DecTree.TreeUtils
)
CrossValidationDriver()
(in
rdkit.ML.NaiveBayes.CrossValidate
)
CherkasskyRiskBound()
(in
rdkit.ML.SLT.Risk
)
CollectLabelLevels()
(in
rdkit.ML.DecTree.TreeUtils
)
CrossValidationDriver()
(in
rdkit.ML.Neural.CrossValidate
)
chgBins
(in
rdkit.Chem.MolSurf
)
CollectResults()
(in
rdkit.ML.ScreenComposite
)
cSma1
(in
rdkit.Chem.Fraggle.FraggleSim
)
Chi0()
(in
rdkit.Chem.GraphDescriptors
)
CollectVotes()
(in
Composite
)
cSma2
(in
rdkit.Chem.Fraggle.FraggleSim
)
Chi0n
(in
rdkit.Chem.GraphDescriptors
)
CollectVotes()
(in
Forest
)
cyc_smarts
(in
rdkit.Chem.Fraggle.FraggleSim
)
Chi0v
(in
rdkit.Chem.GraphDescriptors
)
CollectVotes()
(in
rdkit.ML.MLUtils.VoteImg
)
CYLINDER
(in
rdkit.Chem.Features.ShowFeats
)
D
dash
(in
DrawingOptions
)
defaultBins
(in
rdkit.Chem.Pharm2D.Gobbi_Pharm2D
)
DirMergeMode
(in
rdkit.Chem.FeatMaps.FeatMapUtils
)
data
(in
FastSDMolSupplier
)
defaultColor
(in
DrawingOptions
)
dirScoreMode
(in
FeatMap
)
data
(in
FeatMapParser
)
defaultFeatLength
(in
rdkit.Chem.Pharm3D.EmbedLib
)
dirThresh
(in
SubshapeAligner
)
Data
(in
rdkit.ML
)
defaultPatternFileName
(in
rdkit.Chem.Crippen
)
display_pil_image()
(in
rdkit.Chem.Draw.IPythonConsole
)
DatabaseToDatabase()
(in
rdkit.Dbase.DbUtils
)
defaultPatternFileName
(in
rdkit.Chem.Fragments
)
Displayable
(in
rdkit.Chem.DSViewer
)
DatabaseToText()
(in
rdkit.Dbase.DbUtils
)
DefaultSigFactory()
(in
rdkit.Chem.Pharm2D
)
DisplayCollisions()
(in
MolViewer
)
DataManip
(in rdkit)
defnData
(in
SaltRemover
)
DisplayHBonds()
(in
MolViewer
)
DataStructs
(in rdkit)
defnFilename
(in
SaltRemover
)
DisplayObject()
(in
MolViewer
)
DataUtils
(in
rdkit.ML.Data
)
defPandasRendering
(in
rdkit.Chem.PandasTools
)
DisplayObject()
(in
MolViewer
)
Dbase
(in rdkit)
delete_bonds()
(in
rdkit.Chem.Fraggle.FraggleSim
)
DisplaySubshape()
(in
rdkit.Chem.Subshape.SubshapeObjects
)
DbConnect
(in
rdkit.Dbase.DbConnection
)
DeleteAll()
(in
MolViewer
)
DisplaySubshapeSkeleton()
(in
rdkit.Chem.Subshape.SubshapeObjects
)
DbConnection
(in
rdkit.Dbase
)
DeleteAll()
(in
MolViewer
)
Distance
(in
MergeMetric
)
DbError
(in
rdkit.Dbase.DbConnection
)
DeleteAllExcept()
(in
MolViewer
)
DistanceGeometry
(in rdkit)
dbFileWildcard
(in
rdkit.Dbase.DbModule
)
DeleteAllExcept()
(in
MolViewer
)
DistFunctions
(in
rdkit.ML.KNN
)
DbFpSupplier
(in
rdkit.Chem.Fingerprints
)
delim
(in
RunDetails
)
distMetric
(in
SubshapeAligner
)
DbFpSupplier
(in
rdkit.Chem.Fingerprints.DbFpSupplier
)
demo
(in
rdkit.VLib.NodeLib
)
doBuild
(in
RunDetails
)
DbInfo
(in
rdkit.Dbase
)
DepickleFP()
(in
rdkit.Chem.MolDb.FingerprintUtils
)
doDetails
(in
RunDetails
)
dblBondLengthFrac
(in
DrawingOptions
)
Deriv()
(in
Sigmoid
)
doGains
(in
RunDetails
)
dblBondOffset
(in
DrawingOptions
)
Deriv()
(in
TanH
)
doScore
(in
RunDetails
)
DbModule
(in
rdkit.Dbase
)
DerivFromVal()
(in
Sigmoid
)
doSigs
(in
RunDetails
)
DbMolSupplier
(in
rdkit.Chem.Suppliers
)
DerivFromVal()
(in
TanH
)
Dot()
(in
rdkit.Chem.AtomPairs.Utils
)
DbMolSupplier
(in
rdkit.Chem.Suppliers.DbMolSupplier
)
description
(in
BitGainsInfo
)
DotFullRange
(in
FeatDirScoreMode
)
DbMolSupply
(in
rdkit.VLib.NodeLib
)
DescriptorCalculationError
(in
rdkit.ML.ModelPackage.Packager
)
DotPosRange
(in
FeatDirScoreMode
)
DbMolSupplyNode
(in
rdkit.VLib.NodeLib.DbMolSupply
)
DescriptorCalculator
(in
rdkit.ML.Descriptors.Descriptors
)
DotProduct()
(in
rdkit.DataStructs.SparseIntVect
)
dbName
(in
RunDetails
)
Descriptors
(in
rdkit.Chem
)
dotsPerAngstrom
(in
DrawingOptions
)
DbPickleSupplier
(in
rdkit.VLib.NodeLib
)
Descriptors
(in
rdkit.ML
)
DownsampleBoundsMatrix()
(in
rdkit.Chem.Pharm3D.EmbedLib
)
DbPickleSupplyNode
(in
rdkit.VLib.NodeLib.DbPickleSupplier
)
Descriptors
(in
rdkit.ML.Descriptors
)
Draw
(in
rdkit.Chem
)
DbReport
(in
rdkit.Dbase
)
Destroy()
(in
TreeNode
)
DrawClusterTree()
(in
rdkit.ML.Cluster.ClusterVis
)
DbResultBase
(in
rdkit.Dbase.DbResultSet
)
Destroy()
(in
VLibNode
)
DrawHierarchy()
(in
rdkit.DataStructs.HierarchyVis
)
DbResultSet
(in
rdkit.Dbase
)
DetachVectsMatchingBit()
(in
VectCollection
)
drawing_type_3d
(in
rdkit.Chem.Draw.IPythonConsole
)
DbResultSet
(in
rdkit.Dbase.DbResultSet
)
DetachVectsNotMatchingBit()
(in
VectCollection
)
DrawingOptions
DBToData()
(in
rdkit.ML.Data.DataUtils
)
DetailedScreen()
(in
rdkit.ML.ScreenComposite
)
DrawTree()
(in
ClusterRenderer
)
DbUtils
(in
rdkit.Dbase
)
details()
(in
rdkit.Dbase.Pubmed.QueryParams
)
DrawTree()
(in
rdkit.ML.DecTree.TreeVis
)
decBase
(in
rdkit.Chem.MolDb.Loader_sa
)
detailsName
(in
RunDetails
)
DrawTreeNode()
(in
rdkit.ML.DecTree.TreeVis
)
DecTree
(in
rdkit.ML
)
DEV()
(in
CompoundDescriptorCalculator
)
DropFeature()
(in
FeatMap
)
DecTree
(in
rdkit.ML.DecTree
)
DEV()
(in
rdkit.ML.Descriptors.Parser
)
DSViewer
(in
rdkit.Chem
)
DecTreeNode
(in
rdkit.ML.DecTree.DecTree
)
DiceSimilarity
(in
rdkit.DataStructs.SparseIntVect
)
dummyPattern
(in
rdkit.Chem.BRICS
)
Default
(in
rdkit.Chem.fmcs.fmcs
)
DiceSimilarity()
(in
rdkit.Chem.AtomPairs.Utils
)
DupeFilter
(in
rdkit.VLib.NodeLib.SmilesDupeFilter
)
default_atom_typer
(in
rdkit.Chem.fmcs.fmcs
)
DirectedEdge
(in
rdkit.Chem.fmcs.fmcs
)
dupeFilter
(in
rdkit.VLib.NodeLib.demo
)
default_bond_typer
(in
rdkit.Chem.fmcs.fmcs
)
dirMatch
(in
SubshapeAlignment
)
E
edgeTol
(in
SubshapeAligner
)
environs
(in
rdkit.Chem.BRICS
)
EuclideanDistance()
(in
BitVect
)
elemDict
(in
DrawingOptions
)
error()
(in
rdkit.Chem.Fingerprints.FingerprintMols
)
EuclideanDistance()
(in
rdkit.ML.Cluster.Resemblance
)
EmbedLib
(in
rdkit.Chem.Pharm3D
)
error()
(in
rdkit.ML.EnrichPlot
)
Eval()
(in
Sigmoid
)
EmbedMol()
(in
rdkit.Chem.Pharm3D.EmbedLib
)
error()
(in
rdkit.ML.ScreenComposite
)
Eval()
(in
TanH
)
EmbedOne()
(in
rdkit.Chem.Pharm3D.EmbedLib
)
ErrorStats()
(in
rdkit.ML.AnalyzeComposite
)
Eval()
(in
NetNode
)
EmbedPharmacophore()
(in
rdkit.Chem.Pharm3D.EmbedLib
)
esPatterns
(in
rdkit.Chem.EState.AtomTypes
)
ExactMolWt
(in
rdkit.Chem.Descriptors
)
END
(in
rdkit.Chem.Features.ShowFeats
)
EState
(in
rdkit.Chem
)
ExcludedVolume
(in
rdkit.Chem.Pharm3D
)
EnrichPlot
(in
rdkit.ML
)
EState
(in
rdkit.Chem.EState
)
ExcludedVolume
(in
rdkit.Chem.Pharm3D.ExcludedVolume
)
entropy
(in
rdkit.ML.InfoTheory
)
EState_VSA
(in
rdkit.Chem.EState
)
ExpandTerminalPts()
(in
rdkit.Chem.Subshape.BuilderUtils
)
enumerate_subgraphs()
(in
rdkit.Chem.fmcs.fmcs
)
EState_VSA_()
(in
rdkit.Chem.EState.EState_VSA
)
ExplainAtomCode()
(in
rdkit.Chem.AtomPairs.Utils
)
EnumerateLibraryFromReaction()
(in
rdkit.Chem.AllChem
)
estateBins
(in
rdkit.Chem.EState.EState_VSA
)
ExplainPairScore()
(in
rdkit.Chem.AtomPairs.Pairs
)
EnumerateReaction()
(in
rdkit.Chem.SimpleEnum.Enumerator
)
EStateIndices()
(in
rdkit.Chem.EState.EState
)
ExplainPathScore()
(in
rdkit.Chem.AtomPairs.Torsions
)
EnumerationMolecule
(in
rdkit.Chem.fmcs.fmcs
)
esterPatt
(in
rdkit.Chem.SATIS
)
ExplicitPharmacophore
(in
rdkit.Chem.Pharm3D.Pharmacophore
)
Enumerator
(in
rdkit.Chem.SimpleEnum
)
EuclideanDist()
(in
rdkit.ML.Cluster.Butina
)
Explode()
(in
rdkit.Chem.ChemUtils.TemplateExpand
)
environMatchers
(in
rdkit.Chem.BRICS
)
EuclideanDist()
(in
rdkit.ML.KNN.DistFunctions
)
F
face
(in
Font
)
FilterData()
(in
rdkit.ML.Data.DataUtils
)
flush()
(in
CanvasBase
)
faceMap
(in
rdkit.Chem.Draw.aggCanvas
)
FilterNode
(in
rdkit.VLib.Filter
)
flush()
(in
Canvas
)
faceMap
(in
rdkit.Chem.Draw.spingCanvas
)
find()
(in
JournalArticleRecord
)
flush()
(in
Canvas
)
familiesMatch()
(in
rdkit.Chem.FeatMaps.FeatMapUtils
)
find_duplicates()
(in
rdkit.Chem.fmcs.fmcs
)
fmcs
(in
rdkit.Chem
)
FastSDMolSupplier
(in
rdkit.Chem
)
find_extension_size()
(in
rdkit.Chem.fmcs.fmcs
)
fmcs
(in
rdkit.Chem.fmcs
)
FastSDMolSupplier
(in
rdkit.Chem.FastSDMolSupplier
)
find_extensions()
(in
rdkit.Chem.fmcs.fmcs
)
fmcs()
(in
rdkit.Chem.fmcs.fmcs
)
fdef
(in
rdkit.Chem.Pharm2D.Gobbi_Pharm2D
)
find_upper_fragment_size_limits()
(in
rdkit.Chem.fmcs.fmcs
)
fn
(in
rdkit.Chem.Fragments
)
featDirs
(in
FeatMapPoint
)
findall()
(in
JournalArticleRecord
)
fns
(in
rdkit.Chem.Fragments
)
FeatDirScoreMode
(in
rdkit.Chem.FeatMaps.FeatMaps
)
FindBest()
(in
rdkit.ML.DecTree.BuildQuantTree
)
FoldFingerprintToTargetDensity()
(in
rdkit.Chem.Fingerprints.FingerprintMols
)
FeatDirUtilsRD
(in
rdkit.Chem.Features
)
FindBRICSBonds()
(in
rdkit.Chem.BRICS
)
FoldToTargetDensity()
(in
rdkit.DataStructs
)
featFactory
(in
SubshapeBuilder
)
FindClusterCentroidFromDists()
(in
rdkit.ML.Cluster.ClusterUtils
)
Font
FeatFinderCLI
(in
rdkit.Chem
)
FindFarthestGridPoint()
(in
rdkit.Chem.Subshape.BuilderUtils
)
fontScale
(in
Canvas
)
FeatMap
(in
rdkit.Chem.FeatMaps.FeatMaps
)
FindGridPointBetweenPoints()
(in
rdkit.Chem.Subshape.BuilderUtils
)
ForceField
(in rdkit)
featMap
(in
SubshapeShape
)
FindMCS()
(in
rdkit.Chem.MCS
)
Forest
(in
rdkit.ML.DecTree
)
featmapFeatures
(in
SkeletonPoint
)
FindMinValInList()
(in
rdkit.ML.Cluster.Resemblance
)
Forest
(in
rdkit.ML.DecTree.Forest
)
FeatMapParams
(in
rdkit.Chem.FeatMaps.FeatMaps
)
FindMolChiralCenters()
(in
rdkit.Chem
)
FormCorrelationMatrix()
(in
rdkit.ML.Data.Stats
)
FeatMapParseError
(in
rdkit.Chem.FeatMaps.FeatMapParser
)
findNeighbors()
(in
rdkit.Chem.Features.FeatDirUtilsRD
)
FormCounts()
(in
rdkit.ML.InfoTheory.BitRank
)
FeatMapParser
(in
rdkit.Chem.FeatMaps
)
FindQuantBounds
(in
rdkit.ML.Data
)
FormCovarianceMatrix()
(in
rdkit.ML.Data.Stats
)
FeatMapParser
(in
rdkit.Chem.FeatMaps.FeatMapParser
)
FindSubtree()
(in
Cluster
)
ForwardDbFpSupplier
(in
rdkit.Chem.Fingerprints.DbFpSupplier
)
FeatMapPoint
(in
rdkit.Chem.FeatMaps
)
FindTerminalPtsFromConformer()
(in
rdkit.Chem.Subshape.BuilderUtils
)
ForwardDbMolSupplier
(in
rdkit.Chem.Suppliers.DbMolSupplier
)
FeatMapPoint
(in
rdkit.Chem.FeatMaps.FeatMapPoint
)
FindTerminalPtsFromShape()
(in
rdkit.Chem.Subshape.BuilderUtils
)
fpLen
(in
rdkit.Chem.AtomPairs.Pairs
)
FeatMaps
(in
rdkit.Chem
)
findtext()
(in
JournalArticleRecord
)
fpName
(in
RunDetails
)
FeatMaps
(in
rdkit.Chem.FeatMaps
)
FindVarMultQuantBounds()
(in
rdkit.ML.Data.Quantize
)
fpSize
(in
LayeredOptions
)
FeatMapScoreMode
(in
rdkit.Chem.FeatMaps.FeatMaps
)
FindVarQuantBound()
(in
rdkit.ML.Data.Quantize
)
fraction
(in
SubshapeBuilder
)
FeatMapUtils
(in
rdkit.Chem.FeatMaps
)
Fingerprinter
(in
rdkit.Chem.EState
)
fracVol
(in
SkeletonPoint
)
FeatProfile
(in
FeatMapParams
)
FingerprinterDetails
(in
rdkit.Chem.Fingerprints.FingerprintMols
)
Fraggle
(in
rdkit.Chem
)
featProfile
(in
FeatMapParams
)
FingerprintMol
(in
rdkit.Chem.MACCSkeys
)
FraggleSim
(in
rdkit.Chem.Fraggle
)
Features
(in
rdkit.Chem
)
FingerprintMol()
(in
rdkit.Chem.EState.Fingerprinter
)
FragmentCatalog
(in
rdkit.Chem
)
feq()
(in
rdkit.Chem.FeatMaps.FeatMapUtils
)
FingerprintMol()
(in
rdkit.Chem.Fingerprints.FingerprintMols
)
fragmented_mol_to_enumeration_mols()
(in
rdkit.Chem.fmcs.fmcs
)
feq()
(in
rdkit.ML.Data.Quantize
)
FingerprintMols
(in
rdkit.Chem.Fingerprints
)
FragmentedTypedMolecule
(in
rdkit.Chem.fmcs.fmcs
)
fetchBase
(in
rdkit.Dbase.Pubmed.QueryParams
)
Fingerprints
(in
rdkit.Chem
)
FragmentMatcher
(in
rdkit.Chem
)
FGHierarchyNode
(in
rdkit.Chem.FunctionalGroups
)
FingerprintsFromDetails()
(in
rdkit.Chem.Fingerprints.FingerprintMols
)
FragmentMatcher
(in
rdkit.Chem.FragmentMatcher
)
fields
(in
CompositeRun
)
FingerprintsFromMols()
(in
rdkit.Chem.Fingerprints.FingerprintMols
)
Fragments
(in
rdkit.Chem
)
files
(in
rdkit.ML
)
FingerprintsFromPickles()
(in
rdkit.Chem.Fingerprints.FingerprintMols
)
FrameToGridImage()
(in
rdkit.Chem.PandasTools
)
fileWildcard
(in
rdkit.Dbase.DbModule
)
FingerprintsFromSmiles()
(in
rdkit.Chem.Fingerprints.FingerprintMols
)
FullyConnectNodes()
(in
Network
)
FillParagraph()
(in
rdkit.Dbase.Pubmed.PubmedUtils
)
FingerprintSimilarity()
(in
rdkit.DataStructs
)
FuncGroupFileParseError
(in
rdkit.Chem.FunctionalGroups
)
Filter
(in
rdkit.VLib
)
FingerprintUtils
(in
rdkit.Chem.MolDb
)
FunctionalGroups
(in
rdkit.Chem
)
filter()
(in
SmartsFilter
)
flush()
(in
Canvas
)
filter()
(in
DupeFilter
)
flush()
(in
Canvas
)
G
gain
(in
BitGainsInfo
)
GetData()
(in
DbConnect
)
GetNumHits()
(in
rdkit.Dbase.Pubmed.Searches
)
gainsName
(in
RunDetails
)
GetData()
(in
rdkit.Dbase.DbUtils
)
GetNumNodes()
(in
Network
)
Gaussian
(in
FeatProfile
)
GetData()
(in
Cluster
)
GetNVars()
(in
MLDataSet
)
Gen2DFingerprint()
(in
rdkit.Chem.Pharm2D.Generate
)
GetData()
(in
TreeNode
)
GetOnBits()
(in
BitVect
)
gen_primes()
(in
rdkit.Chem.fmcs.fmcs
)
GetDataCount()
(in
DbConnect
)
GetOnBits()
(in
SparseBitVect
)
Generate
(in
rdkit.Chem.Pharm2D
)
GetDataSet()
(in
CompositeRun
)
GetOnBits()
(in
VectCollection
)
generate_fraggle_fragmentation()
(in
rdkit.Chem.Fraggle.FraggleSim
)
GetDataset()
(in
ModelPackage
)
GetOrVect()
(in
VectCollection
)
generate_smarts()
(in
rdkit.Chem.fmcs.fmcs
)
GetDataSetInfo()
(in
CompositeRun
)
GetOutputNodeList()
(in
Network
)
GenerateDepictionMatching2DStructure()
(in
rdkit.Chem.AllChem
)
GetDataTuple()
(in
Composite
)
GetParent()
(in
TreeNode
)
GenerateDepictionMatching3DStructure()
(in
rdkit.Chem.AllChem
)
GetDataTuple()
(in
Forest
)
GetParents()
(in
VLibNode
)
GenerateSubshapeShape()
(in
SubshapeBuilder
)
GetDbNames()
(in
rdkit.Dbase.DbInfo
)
GetPNG()
(in
MolViewer
)
GenerateSubshapeSkeleton()
(in
SubshapeBuilder
)
getDbSql
(in
rdkit.Dbase.DbModule
)
GetPoints()
(in
Cluster
)
Generator
(in
rdkit.Chem.Pharm2D.LazyGenerator
)
GetDescriptorFuncs()
(in
MolecularDescriptorCalculator
)
GetPointsPositions()
(in
Cluster
)
GenericPicker
(in
rdkit.SimDivFilters.SimilarityPickers
)
GetDescriptorNames()
(in
Composite
)
GetPosition()
(in
Cluster
)
GenMACCSKeys
(in
rdkit.Chem.MACCSkeys
)
GetDescriptorNames()
(in
CompoundDescriptorCalculator
)
GetPossibleScaffolds()
(in
rdkit.Chem.Pharm2D.Utils
)
GenVarTable()
(in
rdkit.ML.DecTree.ID3
)
GetDescriptorNames()
(in
DescriptorCalculator
)
GetPrincipleQuantumNumber()
(in
rdkit.Chem.EState.EState
)
Geometry
(in rdkit)
GetDescriptorNames()
(in
MolecularDescriptorCalculator
)
GetPtNames()
(in
MLDataSet
)
get_canonical_bondtype_counts()
(in
rdkit.Chem.fmcs.fmcs
)
GetDescriptorSummaries()
(in
MolecularDescriptorCalculator
)
GetPts()
(in
TopNContainer
)
get_canonical_bondtypes()
(in
rdkit.Chem.fmcs.fmcs
)
GetDescriptorVersions()
(in
MolecularDescriptorCalculator
)
GetQuantBounds()
(in
Composite
)
get_closure_label()
(in
rdkit.Chem.fmcs.fmcs
)
GetDirMatch()
(in
FeatMapPoint
)
GetQuantBounds()
(in
MLDataSet
)
get_counts()
(in
rdkit.Chem.fmcs.fmcs
)
GetDist2()
(in
FeatMapPoint
)
GetQuantBounds()
(in
QuantTreeNode
)
get_initial_cangen_nodes()
(in
rdkit.Chem.fmcs.fmcs
)
GetDistanceMatrix()
(in
rdkit.Chem.Fingerprints.ClusterMols
)
GetQueryText()
(in
LayeredOptions
)
get_isotopes()
(in
rdkit.Chem.fmcs.fmcs
)
GetDonor1FeatVects()
(in
rdkit.Chem.Features.FeatDirUtilsRD
)
getRadii()
(in
ExplicitPharmacophore
)
get_result()
(in
_SingleBest
)
GetDonor2FeatVects()
(in
rdkit.Chem.Features.FeatDirUtilsRD
)
getRadius()
(in
ExplicitPharmacophore
)
get_selected_atom_classes()
(in
rdkit.Chem.fmcs.fmcs
)
GetDonor3FeatVects()
(in
rdkit.Chem.Features.FeatDirUtilsRD
)
GetRDKFingerprint()
(in
rdkit.Chem.Draw.SimilarityMaps
)
get_specified_types()
(in
rdkit.Chem.fmcs.fmcs
)
GetError()
(in
Composite
)
GetRDKFingerprint()
(in
rdkit.Chem.Fingerprints.FingerprintMols
)
get_typed_fragment()
(in
rdkit.Chem.fmcs.fmcs
)
GetError()
(in
Forest
)
GetRecords()
(in
rdkit.Dbase.Pubmed.Searches
)
get_typed_molecule()
(in
rdkit.Chem.fmcs.fmcs
)
GetExamples()
(in
DecTreeNode
)
GetReportlabTable
(in
rdkit.Dbase.DbReport
)
GetAcceptor1FeatVects()
(in
rdkit.Chem.Features.FeatDirUtilsRD
)
GetExamples()
(in
KNNModel
)
GetResults()
(in
MLDataSet
)
GetAcceptor2FeatVects()
(in
rdkit.Chem.Features.FeatDirUtilsRD
)
GetExamples()
(in
NaiveBayesClassifier
)
GetResults()
(in
MLQuantDataSet
)
GetAcceptor3FeatVects()
(in
rdkit.Chem.Features.FeatDirUtilsRD
)
GetExclusionSMARTS()
(in
FragmentMatcher
)
GetScaffoldForMol()
(in
rdkit.Chem.Scaffolds.MurckoScaffold
)
GetActivityQuantBounds()
(in
Composite
)
GetExtras()
(in
TopNContainer
)
GetScreenImage()
(in
rdkit.ML.ScreenComposite
)
GetAllChildren()
(in
RecapHierarchyNode
)
GetFeatFamilies()
(in
SigFactory
)
GetSearchIds()
(in
rdkit.Dbase.Pubmed.Searches
)
GetAllCombinations()
(in
rdkit.Chem.Pharm2D.Utils
)
GetFeatFeatDistMatrix()
(in
rdkit.Chem.FeatMaps.FeatMapUtils
)
GetSearchURL()
(in
rdkit.Dbase.Pubmed.PubmedUtils
)
GetAllData()
(in
Composite
)
GetFeatFeatScore()
(in
FeatMap
)
GetSelectedAtoms()
(in
MolViewer
)
GetAllData()
(in
MLDataSet
)
GetFeature()
(in
FeatMap
)
GetSelectedAtoms()
(in
MolViewer
)
GetAllData()
(in
MLQuantDataSet
)
getFeature()
(in
ExplicitPharmacophore
)
GetShapeShapeDistance()
(in
rdkit.Chem.Subshape.SubshapeAligner
)
GetAllData()
(in
Forest
)
getFeature()
(in
Pharmacophore
)
GetSignature()
(in
SigFactory
)
GetAllDescriptorNames()
(in
rdkit.ML.Descriptors.CompoundDescriptors
)
GetFeatures()
(in
FeatMap
)
GetSigSize()
(in
SigFactory
)
GetAllNodes()
(in
Network
)
getFeatures()
(in
ExplicitPharmacophore
)
GetSimilarityMapForFingerprint()
(in
rdkit.Chem.Draw.SimilarityMaps
)
GetAllPharmacophoreMatches()
(in
rdkit.Chem.Pharm3D.EmbedLib
)
getFeatures()
(in
Pharmacophore
)
GetSimilarityMapForModel()
(in
rdkit.Chem.Draw.SimilarityMaps
)
GetAPFingerprint()
(in
rdkit.Chem.Draw.SimilarityMaps
)
GetFingerprint()
(in
LayeredOptions
)
GetSimilarityMapFromWeights()
(in
rdkit.Chem.Draw.SimilarityMaps
)
GetAromaticFeatVects()
(in
rdkit.Chem.Features.FeatDirUtilsRD
)
GetFingerprints()
(in
rdkit.Chem.Fingerprints.MolSimilarity
)
GetSingleFingerprint()
(in
SimilarityScreener
)
GetAtomCode
(in
rdkit.Chem.AtomPairs.Utils
)
GetFraggleSimilarity()
(in
rdkit.Chem.Fraggle.FraggleSim
)
GetSMARTS()
(in
FragmentMatcher
)
GetAtomCoords()
(in
MolViewer
)
GetHiddenLayerNodeList()
(in
Network
)
GetStandardizedWeights()
(in
rdkit.Chem.Draw.SimilarityMaps
)
GetAtomCoords()
(in
MolViewer
)
GetIndex()
(in
Cluster
)
GetSubshapeAlignments()
(in
SubshapeAligner
)
GetAtomFeatInfo()
(in
rdkit.Chem.FeatFinderCLI
)
GetIndexCombinations()
(in
rdkit.Chem.Pharm2D.Utils
)
GetSummaries()
(in
rdkit.Dbase.Pubmed.Searches
)
GetAtomHeavyNeighbors()
(in
rdkit.Chem.Pharm3D.EmbedLib
)
GetInputData()
(in
MLDataSet
)
GetSupplementalData()
(in
ModelPackage
)
GetAtomicWeightsForFingerprint()
(in
rdkit.Chem.Draw.SimilarityMaps
)
GetInputData()
(in
MLQuantDataSet
)
GetTableNames()
(in
DbConnect
)
GetAtomicWeightsForModel()
(in
rdkit.Chem.Draw.SimilarityMaps
)
GetInputNodeList()
(in
Network
)
GetTableNames()
(in
rdkit.Dbase.DbInfo
)
GetAtomPairFingerprintAsBitVect()
(in
rdkit.Chem.AtomPairs.Pairs
)
GetInputOrder()
(in
Composite
)
getTablesAndViewsSql
(in
rdkit.Dbase.DbModule
)
GetAtomPairFingerprintAsIntVect
(in
rdkit.Chem.AtomPairs.Pairs
)
GetInputs()
(in
NetNode
)
getTablesSql
(in
rdkit.Dbase.DbModule
)
GetAtomsMatchingBit()
(in
rdkit.Chem.Pharm2D.Matcher
)
GetItemText()
(in
FastSDMolSupplier
)
GetTerminal()
(in
TreeNode
)
GetAvailTransforms()
(in
rdkit.ML.Data.Transforms
)
getiterator()
(in
JournalArticleRecord
)
GetTestExamples()
(in
DecTreeNode
)
GetBadExamples()
(in
DecTreeNode
)
GetLabel()
(in
TreeNode
)
GetTestExamples()
(in
KNNModel
)
GetBadExamples()
(in
KNNClassificationModel
)
GetLastOutputs()
(in
Network
)
GetTestExamples()
(in
NaiveBayesClassifier
)
GetBadExamples()
(in
KNNRegressionModel
)
GetLeaves()
(in
RecapHierarchyNode
)
GetTFDBetweenConformers()
(in
rdkit.Chem.TorsionFingerprints
)
GetBadExamples()
(in
NaiveBayesClassifier
)
GetLevel()
(in
TreeNode
)
GetTFDBetweenMolecules()
(in
rdkit.Chem.TorsionFingerprints
)
GetBestRMS()
(in
rdkit.Chem.AllChem
)
GetLinks()
(in
rdkit.Dbase.Pubmed.Searches
)
GetTFDMatrix()
(in
rdkit.Chem.TorsionFingerprints
)
GetBins()
(in
SigFactory
)
getLowerBound()
(in
Pharmacophore
)
GetTopologicalTorsionFingerprintAsIds()
(in
rdkit.Chem.AtomPairs.Torsions
)
GetBit()
(in
Generator
)
getLowerBound2D()
(in
Pharmacophore
)
GetTopologicalTorsionFingerprintAsIntVect
(in
rdkit.Chem.AtomPairs.Torsions
)
GetBit()
(in
VectCollection
)
GetMatch()
(in
FragmentMatcher
)
GetTotalVal()
(in
pySparseIntVect
)
GetBitDescription()
(in
SigFactory
)
GetMatches()
(in
FragmentMatcher
)
GetTrainingExamples()
(in
DecTreeNode
)
GetBitDescriptionAsText()
(in
SigFactory
)
GetMetric()
(in
Cluster
)
GetTrainingExamples()
(in
KNNModel
)
GetBitIdx()
(in
SigFactory
)
GetMetricName()
(in
FingerprinterDetails
)
GetTrainingExamples()
(in
NaiveBayesClassifier
)
GetBitInfo()
(in
SigFactory
)
GetMinCanvasSize()
(in
rdkit.DataStructs.HierarchyVis
)
GetTree()
(in
Forest
)
GetBits()
(in
BitEnsemble
)
GetModel()
(in
Composite
)
GetTriangleMatches()
(in
SubshapeAligner
)
GetBond()
(in
FragmentMatcher
)
GetModel()
(in
ModelPackage
)
GetTriangles()
(in
rdkit.Chem.Pharm2D.Utils
)
GetCalculator()
(in
ModelPackage
)
GetMolFeats()
(in
SigFactory
)
GetTTFingerprint()
(in
rdkit.Chem.Draw.SimilarityMaps
)
GetChildren()
(in
VectCollection
)
GetMolsMatchingBit()
(in
rdkit.Chem.FragmentCatalog
)
GetTypeStrings()
(in
rdkit.Dbase.DbUtils
)
GetChildren()
(in
Cluster
)
GetMoreTerminalPoints()
(in
rdkit.Chem.Subshape.BuilderUtils
)
getUltimateParents()
(in
RecapHierarchyNode
)
GetChildren()
(in
TreeNode
)
GetMorganFingerprint()
(in
rdkit.Chem.Draw.SimilarityMaps
)
GetUniqueCombinations()
(in
rdkit.Chem.Pharm2D.Utils
)
GetChildren()
(in
VLibNode
)
GetName()
(in
Cluster
)
getUpperBound()
(in
Pharmacophore
)
GetClassificationDetails()
(in
NaiveBayesClassifier
)
GetName()
(in
TreeNode
)
getUpperBound2D()
(in
Pharmacophore
)
GetClusters()
(in
BitClusterer
)
GetName()
(in
KNNModel
)
GetVarNames()
(in
MLDataSet
)
GetColumnInfoFromCursor()
(in
rdkit.Dbase.DbInfo
)
GetName()
(in
NaiveBayesClassifier
)
GetVoteDetails()
(in
Composite
)
GetColumnNames()
(in
DbFpSupplier
)
GetNamedData()
(in
MLDataSet
)
GetVoteDetails()
(in
Forest
)
GetColumnNames()
(in
DbMolSupplier
)
GetNamedData()
(in
MLQuantDataSet
)
GetWeights()
(in
NetNode
)
GetColumnNames()
(in
DbConnect
)
GetNeighbors()
(in
KNNModel
)
GetWords()
(in
LayeredOptions
)
GetColumnNames()
(in
rdkit.Dbase.DbInfo
)
GetNextId()
(in
rdkit.Dbase.StorageUtils
)
Go()
(in
rdkit.ML.ScreenComposite
)
GetColumnNames()
(in
DbResultBase
)
GetNextRDId()
(in
rdkit.Dbase.StorageUtils
)
Gobbi_Pharm2D
(in
rdkit.Chem.Pharm2D
)
GetColumnNamesAndTypes()
(in
DbConnect
)
GetNode()
(in
Network
)
GOWER
(in
rdkit.ML.Cluster.Murtagh
)
GetColumnNamesAndTypes()
(in
rdkit.Dbase.DbInfo
)
GetNode()
(in
rdkit.VLib.NodeLib.DbMolSupply
)
GraphDescriptors
(in
rdkit.Chem
)
GetColumnNamesAndTypes()
(in
DbResultBase
)
GetNode()
(in
rdkit.VLib.NodeLib.DbPickleSupplier
)
Graphs
(in
rdkit.Chem
)
GetColumns()
(in
DbConnect
)
GetNodeList()
(in
rdkit.ML.Cluster.ClusterUtils
)
grid
(in
ShapeWithSkeleton
)
GetColumns()
(in
rdkit.Dbase.DbUtils
)
GetNodesDownToCentroids()
(in
rdkit.ML.Cluster.ClusterUtils
)
gridDims
(in
SubshapeBuilder
)
GetColumnTypes()
(in
DbResultBase
)
GetNotes()
(in
ModelPackage
)
gridSpacing
(in
SubshapeBuilder
)
GetCommandLine()
(in
rdkit.ML.BuildComposite
)
GetNPossibleVals()
(in
MLDataSet
)
groupDefns
(in
rdkit.Chem.FunctionalGroups
)
GetComposites()
(in
rdkit.ML.GrowComposite
)
GetNPts()
(in
MLDataSet
)
Grow()
(in
Composite
)
GetConfidenceInterval()
(in
rdkit.ML.Data.Stats
)
GetNResults()
(in
MLDataSet
)
Grow()
(in
Forest
)
GetConformerRMS()
(in
rdkit.Chem.AllChem
)
GetNumBins()
(in
SigFactory
)
GrowComposite
(in
rdkit.ML
)
GetConformerRMSMatrix()
(in
rdkit.Chem.AllChem
)
GetNumBits()
(in
BitEnsemble
)
GrowIt()
(in
rdkit.ML.GrowComposite
)
GetCount()
(in
Composite
)
GetNumBits()
(in
VectCollection
)
guid
(in
Compound
)
GetCount()
(in
Forest
)
GetNumFeatures()
(in
FeatMap
)
GetCursor()
(in
DbConnect
)
GetNumHidden()
(in
Network
)
H
HAcceptorSmarts
(in
rdkit.Chem.Lipinski
)
HeavyAtomCount()
(in
rdkit.Chem.Lipinski
)
HighlightAtoms()
(in
MolViewer
)
HallKierAlpha
(in
rdkit.Chem.GraphDescriptors
)
HeavyAtomMolWt
(in
rdkit.Chem.Descriptors
)
highlightColor
(in
VisOpts
)
hallKierAlphas
(in
rdkit.Chem.PeriodicTable
)
HeteroatomSmarts
(in
rdkit.Chem.Lipinski
)
highlightColor
(in
VisOpts
)
HAS()
(in
rdkit.ML.Descriptors.Parser
)
Hide()
(in
Displayable
)
highlightColor
(in
VisOpts
)
hasCDX
(in
rdkit.Dbase.DbReport
)
HideAll()
(in
MolViewer
)
highlightRad
(in
VisOpts
)
hascEntropy
(in
rdkit.ML.InfoTheory.entropy
)
HideAll()
(in
MolViewer
)
highlightSubstructs
(in
rdkit.Chem.Draw.IPythonConsole
)
hascQuantize
(in
rdkit.ML.Data.Quantize
)
hideColor
(in
VisOpts
)
highlightSubstructures
(in
rdkit.Chem.PandasTools
)
HasMatch()
(in
FragmentMatcher
)
HideObject()
(in
MolViewer
)
highlightWidth
(in
VisOpts
)
hasPil
(in
rdkit.ML.ScreenComposite
)
HideObject()
(in
MolViewer
)
highlightWidth
(in
VisOpts
)
hasTitle
(in
RunDetails
)
hideWidth
(in
VisOpts
)
horizOffset
(in
VisOpts
)
HDonorSmarts
(in
rdkit.Chem.Lipinski
)
hierarchy
(in
rdkit.Chem.FunctionalGroups
)
horizOffset
(in
VisOpts
)
heappop()
(in
VerboseHeapOps
)
HierarchyVis
(in
rdkit.DataStructs
)
heappush()
(in
VerboseHeapOps
)
HighlightAtoms()
(in
MolViewer
)
I
id
(in
BitGainsInfo
)
includeAtomNumbers
(in
DrawingOptions
)
Insert()
(in
TopNContainer
)
ID3
(in
rdkit.ML.DecTree
)
IndexToRDId()
(in
rdkit.Dbase.StorageUtils
)
InsertColumnData()
(in
DbConnect
)
ID3()
(in
rdkit.ML.DecTree.ID3
)
inFileName
(in
RunDetails
)
InsertData()
(in
DbConnect
)
ID3Boot()
(in
rdkit.ML.DecTree.ID3
)
InfoTheory
(in
rdkit.ML
)
InstallIPythonRenderer()
(in
rdkit.Chem.Draw.IPythonConsole
)
idx1
(in
rdkit.Chem.BuildFragmentCatalog
)
init()
(in
FastSDMolSupplier
)
INTERSECT
(in
SubshapeCombineOperations
)
idx1
(in
rdkit.Chem.Fingerprints.ClusterMols
)
Init()
(in
FragmentMatcher
)
intersect_counts()
(in
rdkit.Chem.fmcs.fmcs
)
idx1
(in
rdkit.Chem.Fingerprints.FingerprintMols
)
Init()
(in
SigFactory
)
io
(in
rdkit.VLib.NodeLib.demo
)
idx1
(in
rdkit.Chem.Fingerprints.MolSimilarity
)
Init()
(in
ModelPackage
)
Ipc()
(in
rdkit.Chem.GraphDescriptors
)
idx2
(in
rdkit.Chem.BuildFragmentCatalog
)
initFromFeat()
(in
FeatMapPoint
)
ipython_3d
(in
rdkit.Chem.Draw.IPythonConsole
)
idx2
(in
rdkit.Chem.Fingerprints.ClusterMols
)
initFromFile()
(in
ExplicitPharmacophore
)
ipython_useSVG
(in
rdkit.Chem.Draw.IPythonConsole
)
idx2
(in
rdkit.Chem.Fingerprints.FingerprintMols
)
initFromLines()
(in
ExplicitPharmacophore
)
IPythonConsole
(in
rdkit.Chem.Draw
)
idx2
(in
rdkit.Chem.Fingerprints.MolSimilarity
)
InitFromSequence()
(in
pySparseIntVect
)
is_ring_cut_valid()
(in
rdkit.Chem.Fraggle.FraggleSim
)
Ignore
(in
FeatDirScoreMode
)
initFromString()
(in
ExplicitPharmacophore
)
isNaN()
(in
rdkit.Chem.Pharm3D.EmbedLib
)
inchi
(in
rdkit.Chem
)
InitializePyMol()
(in
MolViewer
)
IsTerminal()
(in
Cluster
)
INCHI_AVAILABLE
(in
rdkit.Chem.inchi
)
InitRandomNumbers()
(in
rdkit.ML.Data.DataUtils
)
J
JournalArticleRecord
(in
rdkit.Dbase.Pubmed.Records
)
K
Kappa1
(in
rdkit.Chem.GraphDescriptors
)
keyFeat
(in
SubshapeShape
)
KNNModel
(in
rdkit.ML.KNN
)
Kappa2
(in
rdkit.Chem.GraphDescriptors
)
KillCursor()
(in
DbConnect
)
KNNModel
(in
rdkit.ML.KNN.KNNModel
)
Kappa3
(in
rdkit.Chem.GraphDescriptors
)
KNN
(in
rdkit.ML
)
KNNRegressionModel
(in
rdkit.ML.KNN
)
kekulizeStructures
(in
rdkit.Chem.Draw.IPythonConsole
)
KNNClassificationModel
(in
rdkit.ML.KNN
)
KNNRegressionModel
(in
rdkit.ML.KNN.KNNRegressionModel
)
ketonePatt
(in
rdkit.Chem.SATIS
)
KNNClassificationModel
(in
rdkit.ML.KNN.KNNClassificationModel
)
knownMethods
(in
rdkit.ML.Descriptors.Parser
)
L
label
(in
FGHierarchyNode
)
lineWidth
(in
VisOpts
)
logger
(in
rdkit.Chem.AllChem
)
labelFont
(in
VisOpts
)
linkBase
(in
rdkit.Dbase.Pubmed.QueryParams
)
logger
(in
rdkit.Chem.ChemUtils.TemplateExpand
)
labelFont
(in
VisOpts
)
LinkRecord
(in
rdkit.Dbase.Pubmed.Records
)
logger
(in
rdkit.Chem.FeatFinderCLI
)
LabuteASA
(in
rdkit.Chem.MolSurf
)
Lipinski
(in
rdkit.Chem
)
logger
(in
rdkit.Chem.Features.ShowFeats
)
lastData
(in
rdkit.Chem.FunctionalGroups
)
LoadDb()
(in
rdkit.Chem.MolDb.Loader_orig
)
logger
(in
rdkit.Chem.MolDb.Loader_orig
)
lastFilename
(in
rdkit.Chem.FunctionalGroups
)
LoadDb()
(in
rdkit.Chem.MolDb.Loader_sa
)
logger
(in
rdkit.Chem.MolDb.Loader_sa
)
LayeredOptions
(in
rdkit.Chem.MolDb.FingerprintUtils
)
Loader
(in
rdkit.Chem.MolDb
)
logger
(in
rdkit.Chem.Pharm2D.Generate
)
LazyGenerator
(in
rdkit.Chem.Pharm2D
)
Loader_orig
(in
rdkit.Chem.MolDb
)
logger
(in
rdkit.Chem.Pharm3D.EmbedLib
)
LazySig
(in
rdkit.DataStructs.LazySignature
)
Loader_sa
(in
rdkit.Chem.MolDb
)
logger
(in
rdkit.Chem.Pharm3D.Pharmacophore
)
LazySignature
(in
rdkit.DataStructs
)
LoadFile()
(in
MolViewer
)
logger
(in
rdkit.Chem.Subshape.SubshapeAligner
)
lineColor
(in
VisOpts
)
LoadFile()
(in
MolViewer
)
logger
(in
rdkit.ML.Cluster.Butina
)
lineColor
(in
VisOpts
)
loadLayerFlags
(in
LayeredOptions
)
logger
(in
rdkit.ML.Descriptors.MoleculeDescriptors
)
lineColor
(in
VisOpts
)
LoadSDF()
(in
rdkit.Chem.PandasTools
)
logpBins
(in
rdkit.Chem.MolSurf
)
lineWidth
(in
VisOpts
)
location
(in
SkeletonPoint
)
lineWidth
(in
VisOpts
)
log2()
(in
rdkit.ML.SLT.Risk
)
M
MACCSkeys
(in
rdkit.Chem
)
maxPath
(in
LayeredOptions
)
MLUtils
(in
rdkit.ML
)
maccsKeys
(in
rdkit.Chem.MACCSkeys
)
MCFF_GetFeaturesForMol()
(in
rdkit.Chem.ChemicalFeatures
)
ModelPackage
(in
rdkit.ML
)
main()
(in
rdkit.Chem.fmcs.fmcs
)
MCQUITTY
(in
rdkit.ML.Cluster.Murtagh
)
ModelPackage
(in
rdkit.ML.ModelPackage.Packager
)
make_arbitrary_smarts()
(in
rdkit.Chem.fmcs.fmcs
)
MCS
(in
rdkit.Chem
)
modified_query_fps
(in
rdkit.Chem.Fraggle.FraggleSim
)
make_canonical_smarts()
(in
rdkit.Chem.fmcs.fmcs
)
MCSResult
(in
rdkit.Chem.MCS
)
mol
(in
RecapHierarchyNode
)
make_complete_sdf()
(in
rdkit.Chem.fmcs.fmcs
)
MCSResult
(in
rdkit.Chem.fmcs.fmcs
)
MolCatalog
(in
rdkit.Chem
)
make_fragment_sdf()
(in
rdkit.Chem.fmcs.fmcs
)
MEAN()
(in
CompoundDescriptorCalculator
)
MolDb
(in
rdkit.Chem
)
make_fragment_smiles()
(in
rdkit.Chem.fmcs.fmcs
)
MEAN()
(in
rdkit.ML.Descriptors.Parser
)
MolDrawing
(in
rdkit.Chem.Draw
)
make_structure_format()
(in
rdkit.Chem.fmcs.fmcs
)
MeanAndDev()
(in
rdkit.ML.Data.Stats
)
MolDrawing
makeClassificationModel()
(in
rdkit.ML.KNN.CrossValidate
)
medGridToleranceMult
(in
SubshapeAligner
)
MolecularDescriptorCalculator
(in
rdkit.ML.Descriptors.MoleculeDescriptors
)
MakeHistogram()
(in
Composite
)
MergeFeatPoints()
(in
rdkit.Chem.FeatMaps.FeatMapUtils
)
MoleculeDescriptors
(in
rdkit.ML.Descriptors
)
MakeHistogram()
(in
Forest
)
MergeMethod
(in
rdkit.Chem.FeatMaps.FeatMapUtils
)
molFeatures
(in
SkeletonPoint
)
makeNBClassificationModel()
(in
rdkit.ML.NaiveBayes.CrossValidate
)
MergeMetric
(in
rdkit.Chem.FeatMaps.FeatMapUtils
)
MolLogP
(in
rdkit.Chem.Crippen
)
MakePicks()
(in
GenericPicker
)
message()
(in
rdkit.Chem.BuildFragmentCatalog
)
MolMR
(in
rdkit.Chem.Crippen
)
MakePicks()
(in
SpreadPicker
)
message()
(in
rdkit.Chem.Fingerprints.FingerprintMols
)
molpkl
(in
Compound
)
MakePicks()
(in
TopNOverallPicker
)
message()
(in
rdkit.Chem.FragmentCatalog
)
mols
(in
rdkit.VLib.NodeLib.demo
)
MakePlot()
(in
rdkit.ML.EnrichPlot
)
message()
(in
rdkit.ML.BuildComposite
)
MolSimilarity
(in
rdkit.Chem.Fingerprints
)
MakePredPlot()
(in
rdkit.ML.ScreenComposite
)
message()
(in
rdkit.ML.EnrichPlot
)
molSize
(in
rdkit.Chem.Draw.IPythonConsole
)
makeRegressionModel()
(in
rdkit.ML.KNN.CrossValidate
)
message()
(in
rdkit.ML.GrowComposite
)
molSize_3d
(in
rdkit.Chem.Draw.IPythonConsole
)
MakeScaffoldGeneric()
(in
rdkit.Chem.Scaffolds.MurckoScaffold
)
message()
(in
rdkit.ML.ScreenComposite
)
MolsToGridImage()
(in
rdkit.Chem.Draw
)
MapToClusterFP()
(in
BitClusterer
)
metalNames
(in
rdkit.Chem.PeriodicTable
)
MolsToImage()
(in
rdkit.Chem.Draw
)
MapToClusterScores()
(in
BitClusterer
)
metalNumList
(in
rdkit.Chem.PeriodicTable
)
MolSupplier
(in
rdkit.Chem.Suppliers
)
mark()
(in
Timer
)
metalRanges
(in
rdkit.Chem.PeriodicTable
)
MolSupplier
(in
rdkit.Chem.Suppliers.MolSupplier
)
MATCH()
(in
rdkit.Chem.fmcs.fmcs
)
metals
(in
rdkit.VLib.NodeLib.demo
)
MolSurf
(in
rdkit.Chem
)
Matcher
(in
rdkit.Chem.Pharm2D
)
methods
(in
rdkit.ML.Cluster.Murtagh
)
MolToFile()
(in
rdkit.Chem.Draw
)
MatchError
(in
rdkit.Chem.Pharm2D.Matcher
)
methods
(in
rdkit.ML.Cluster.Resemblance
)
MolToImage()
(in
rdkit.Chem.Draw
)
MatchFeatsToMol()
(in
rdkit.Chem.Pharm3D.EmbedLib
)
methods
(in
rdkit.ML.Cluster.Standardize
)
MolToImageFile()
(in
rdkit.Chem.Draw
)
MatchPharmacophore()
(in
rdkit.Chem.Pharm3D.EmbedLib
)
Metric
(in
rdkit.DataManip
)
MolToMPL()
(in
rdkit.Chem.Draw
)
MatchPharmacophoreToMol()
(in
rdkit.Chem.Pharm3D.EmbedLib
)
MIN()
(in
CompoundDescriptorCalculator
)
MolToQPixmap()
(in
rdkit.Chem.Draw
)
matchValences
(in
Default
)
MIN()
(in
rdkit.ML.Descriptors.Parser
)
MolViewer
(in
rdkit.Chem.DSViewer
)
MatOps
(in
rdkit.ML
)
MinAbsEStateIndex()
(in
rdkit.Chem.EState.EState
)
MolViewer
(in
rdkit.Chem.PyMol
)
MAX()
(in
CompoundDescriptorCalculator
)
MinAbsPartialCharge()
(in
rdkit.Chem.Descriptors
)
MolWt
(in
rdkit.Chem.Descriptors
)
MAX()
(in
rdkit.ML.Descriptors.Parser
)
minCircRad
(in
VisOpts
)
MoveDummyNeighborsToBeginning()
(in
rdkit.Chem.ChemUtils.TemplateExpand
)
MaxAbsEStateIndex()
(in
rdkit.Chem.EState.EState
)
minCircRad
(in
VisOpts
)
mplCanvas
(in
rdkit.Chem.Draw
)
MaxAbsPartialCharge()
(in
rdkit.Chem.Descriptors
)
MinEStateIndex()
(in
rdkit.Chem.EState.EState
)
mrBins
(in
rdkit.Chem.MolSurf
)
maxCircRad
(in
VisOpts
)
MinPartialCharge()
(in
rdkit.Chem.Descriptors
)
murckoPatts
(in
rdkit.Chem.Scaffolds.MurckoScaffold
)
maxCircRad
(in
VisOpts
)
minPath
(in
RunDetails
)
murckoQ
(in
rdkit.Chem.Scaffolds.MurckoScaffold
)
MaxCount()
(in
rdkit.ML.DecTree.PruneTree
)
minPath
(in
LayeredOptions
)
MurckoScaffold
(in
rdkit.Chem.Scaffolds
)
MaxEStateIndex()
(in
rdkit.Chem.EState.EState
)
ML
(in rdkit)
MurckoScaffoldSmiles()
(in
rdkit.Chem.Scaffolds.MurckoScaffold
)
maximize
(in
Default
)
MLData
(in
rdkit.ML.Data
)
MurckoScaffoldSmilesFromSmiles()
(in
rdkit.Chem.Scaffolds.MurckoScaffold
)
MaxPartialCharge()
(in
rdkit.Chem.Descriptors
)
MLDataSet
(in
rdkit.ML.Data.MLData
)
murckoTransforms
(in
rdkit.Chem.Scaffolds.MurckoScaffold
)
maxPath
(in
RunDetails
)
MLQuantDataSet
(in
rdkit.ML.Data.MLData
)
Murtagh
(in
rdkit.ML.Cluster
)
N
nActs
(in
RunDetails
)
next()
(in
MolSupplier
)
nodeRad
(in
VisOpts
)
NaiveBayes
(in
rdkit.ML
)
next()
(in
DbResultSet
)
NoMerge
(in
DirMergeMode
)
NaiveBayesClassifier
(in
rdkit.ML.NaiveBayes.ClassificationModel
)
next()
(in
RandomAccessDbResultSet
)
NoMerge
(in
MergeMetric
)
name
(in
Font
)
next()
(in
FilterNode
)
nonempty_powerset()
(in
rdkit.Chem.fmcs.fmcs
)
name
(in
FGHierarchyNode
)
next()
(in
VLibNode
)
NORMAL
(in
rdkit.Chem.Features.ShowFeats
)
nameCol
(in
RunDetails
)
next()
(in
DbMolSupplyNode
)
nPerClass
(in
BitGainsInfo
)
NameModel()
(in
SigTreeNode
)
next()
(in
DbPickleSupplyNode
)
nPointDistDict
(in
rdkit.Chem.Pharm2D.Utils
)
NameModel()
(in
KNNClassificationModel
)
next()
(in
_lazyDataSeq
)
NumChildren()
(in
VectCollection
)
NameModel()
(in
KNNRegressionModel
)
next()
(in
SDSupplyNode
)
NumCombinations()
(in
rdkit.Chem.Pharm2D.Utils
)
NameModel()
(in
NaiveBayesClassifier
)
next()
(in
SmilesSupplyNode
)
Numerics
(in rdkit)
nameTable
(in
rdkit.Chem.PeriodicTable
)
next()
(in
OutputNode
)
numericTypes
(in
rdkit.ML.Data.MLData
)
NameTree()
(in
TreeNode
)
next()
(in
SupplyNode
)
numFeatThresh
(in
SubshapeAligner
)
nBits
(in
RunDetails
)
next()
(in
TransformNode
)
numFpBits
(in
rdkit.Chem.AtomPairs.Pairs
)
nbrCount
(in
SubshapeBuilder
)
NextItem()
(in
ForwardDbFpSupplier
)
NumHAcceptors
(in
rdkit.Chem.Lipinski
)
nDistPointDict
(in
rdkit.Chem.Pharm2D.Utils
)
NextItem()
(in
RandomAccessDbFpSupplier
)
NumHDonors
(in
rdkit.Chem.Lipinski
)
nDumped
(in
rdkit.Chem.ChemUtils.TemplateExpand
)
NextMol()
(in
ForwardDbMolSupplier
)
NumHeteroatoms
(in
rdkit.Chem.Lipinski
)
Negate()
(in
FilterNode
)
NextMol()
(in
RandomAccessDbMolSupplier
)
numMols
(in
RunDetails
)
NetNode
(in
rdkit.ML.Neural
)
NextMol()
(in
MolSupplier
)
NumOnBits()
(in
BitVect
)
NetNode
(in
rdkit.ML.Neural.NetNode
)
NHOHCount
(in
rdkit.Chem.Lipinski
)
NumOnBits()
(in
SparseBitVect
)
Network
(in
rdkit.ML.Neural
)
NHOHSmarts
(in
rdkit.Chem.Lipinski
)
numPathBits
(in
rdkit.Chem.AtomPairs.Pairs
)
Network
(in
rdkit.ML.Neural.Network
)
noCarbonSymbols
(in
DrawingOptions
)
NumPiElectrons()
(in
rdkit.Chem.AtomPairs.Utils
)
Neural
(in
rdkit.ML
)
NOCount
(in
rdkit.Chem.Lipinski
)
NumRadicalElectrons()
(in
rdkit.Chem.Descriptors
)
next()
(in
FastSDMolSupplier
)
NOCountSmarts
(in
rdkit.Chem.Lipinski
)
NumRotatableBonds
(in
rdkit.Chem.Lipinski
)
next()
(in
DbFpSupplier
)
Node
(in
rdkit.VLib
)
numTable
(in
rdkit.Chem.PeriodicTable
)
next()
(in
ThresholdScreener
)
nodeColor
(in
VisOpts
)
NumValenceElectrons()
(in
rdkit.Chem.Descriptors
)
next()
(in
TopNScreener
)
NodeLib
(in
rdkit.VLib
)
nWords
(in
LayeredOptions
)
O
onBitsName
(in
RunDetails
)
OutgoingEdge
(in
rdkit.Chem.fmcs.fmcs
)
OutputGainsData()
(in
rdkit.Chem.BuildFragmentCatalog
)
openURL()
(in
rdkit.Dbase.Pubmed.Searches
)
outlineColor
(in
VisOpts
)
OutputNode
(in
rdkit.VLib.NodeLib.SmilesOutput
)
OptimizeMol()
(in
rdkit.Chem.Pharm3D.EmbedLib
)
outlineColor
(in
VisOpts
)
OutputNode
(in
rdkit.VLib.Output
)
OrderTriangle()
(in
rdkit.Chem.Pharm2D.Utils
)
output
(in
rdkit.VLib.NodeLib.demo
)
Overlap
(in
MergeMetric
)
orVect()
(in
VectCollection
)
Output
(in
rdkit.VLib
)
P
Packager
(in
rdkit.ML.ModelPackage
)
pattern
(in
FGHierarchyNode
)
ProcessIt()
(in
rdkit.ML.AnalyzeComposite
)
PackageToXml()
(in
rdkit.ML.ModelPackage.PackageUtils
)
pd
(in
rdkit.Chem.PandasTools
)
ProcessMol()
(in
rdkit.Chem.MolDb.Loader_orig
)
PackageUtils
(in
rdkit.ML.ModelPackage
)
PEOE_VSA_
(in
rdkit.Chem.MolSurf
)
ProcessMol()
(in
rdkit.Chem.MolDb.Loader_sa
)
Pairs
(in
rdkit.Chem.AtomPairs
)
periodicData
(in
rdkit.Chem.PeriodicTable
)
ProcessSimpleList()
(in
CompoundDescriptorCalculator
)
PandasTools
(in
rdkit.Chem
)
periodicTable
(in
rdkit.Chem.Draw.MolDrawing
)
PropertyMol
(in
rdkit.Chem
)
pango
(in
rdkit.Chem.Draw.cairoCanvas
)
periodicTable
(in
rdkit.Chem.GraphDescriptors
)
PropertyMol
(in
rdkit.Chem.PropertyMol
)
pangocairo
(in
rdkit.Chem.Draw.cairoCanvas
)
PeriodicTable
(in
rdkit.Chem
)
PROTRUDE
(in
SubshapeDistanceMetric
)
params
(in
FeatMap
)
permutation()
(in
rdkit.ML.Data.DataUtils
)
prune_maximize_atoms()
(in
rdkit.Chem.fmcs.fmcs
)
parent
(in
FGHierarchyNode
)
Pharm2D
(in
rdkit.Chem
)
prune_maximize_bonds()
(in
rdkit.Chem.fmcs.fmcs
)
parents
(in
RecapHierarchyNode
)
Pharm3D
(in
rdkit.Chem
)
PruneChild()
(in
TreeNode
)
Parse()
(in
FeatMapParser
)
Pharmacophore
(in
rdkit.Chem.Pharm3D
)
PruneMatchesUsingDirection()
(in
SubshapeAligner
)
parse_num_atoms()
(in
rdkit.Chem.fmcs.fmcs
)
Pharmacophore
(in
rdkit.Chem.Pharm3D.Pharmacophore
)
PruneMatchesUsingFeatures()
(in
SubshapeAligner
)
parse_select()
(in
rdkit.Chem.fmcs.fmcs
)
Pickle()
(in
Composite
)
PruneMatchesUsingShape()
(in
SubshapeAligner
)
parse_threshold()
(in
rdkit.Chem.fmcs.fmcs
)
Pickle()
(in
Forest
)
PruneTree
(in
rdkit.ML.DecTree
)
parse_timeout()
(in
rdkit.Chem.fmcs.fmcs
)
Pickle()
(in
TreeNode
)
PruneTree()
(in
rdkit.ML.DecTree.PruneTree
)
ParseArgs()
(in
rdkit.Chem.BuildFragmentCatalog
)
placeHolder
(in
rdkit.Dbase.DbModule
)
Pubmed
(in
rdkit.Dbase
)
ParseArgs()
(in
rdkit.Chem.Fingerprints.FingerprintMols
)
powerset()
(in
rdkit.Chem.fmcs.fmcs
)
PubmedUtils
(in
rdkit.Dbase.Pubmed
)
ParseArgs()
(in
rdkit.ML.BuildComposite
)
PredictExample()
(in
KNNRegressionModel
)
pyDiceSimilarity()
(in
rdkit.DataStructs.SparseIntVect
)
ParseArgs()
(in
rdkit.ML.GrowComposite
)
PrepareDataFromDetails()
(in
rdkit.ML.ScreenComposite
)
PyInfoEntropy()
(in
rdkit.ML.InfoTheory.entropy
)
ParseArgs()
(in
rdkit.ML.ScreenComposite
)
PreprocessReaction()
(in
rdkit.Chem.SimpleEnum.Enumerator
)
PyInfoGain()
(in
rdkit.ML.InfoTheory.entropy
)
ParseChemicals()
(in
JournalArticleRecord
)
PrincipalComponents()
(in
rdkit.ML.Data.Stats
)
pyLabuteASA()
(in
rdkit.Chem.MolSurf
)
ParseFeatPointBlock()
(in
FeatMapParser
)
Print()
(in
Cluster
)
PyMol
(in
rdkit.Chem
)
ParseKeywords()
(in
JournalArticleRecord
)
Print()
(in
TreeNode
)
pyPEOE_VSA_()
(in
rdkit.Chem.MolSurf
)
ParseParamBlock()
(in
FeatMapParser
)
PrintAsBase64PNGString()
(in
rdkit.Chem.PandasTools
)
pyScorePair()
(in
rdkit.Chem.AtomPairs.Pairs
)
parser
(in
rdkit.Chem.Features.ShowFeats
)
PrintDefaultMolRep()
(in
rdkit.Chem.PandasTools
)
pyScorePath()
(in
rdkit.Chem.AtomPairs.Torsions
)
Parser
(in
rdkit.ML.Descriptors
)
ProcessCompoundList()
(in
CompoundDescriptorCalculator
)
pySlogP_VSA_()
(in
rdkit.Chem.MolSurf
)
patchPandasHeadMethod()
(in
rdkit.Chem.PandasTools
)
ProcessGainsData()
(in
rdkit.Chem.BuildFragmentCatalog
)
pySMR_VSA_()
(in
rdkit.Chem.MolSurf
)
patchPandasHTMLrepr()
(in
rdkit.Chem.PandasTools
)
ProcessGainsFile()
(in
rdkit.Chem.FragmentCatalog
)
pySparseIntVect
(in
rdkit.DataStructs.SparseIntVect
)
Q
qtCanvas
(in
rdkit.Chem.Draw
)
QuantTree
(in
rdkit.ML.DecTree
)
QueryParams
(in
rdkit.Dbase.Pubmed
)
Quantize
(in
rdkit.ML.Data
)
QuantTreeBoot()
(in
rdkit.ML.DecTree.BuildQuantTree
)
queryTri
(in
SubshapeAlignment
)
QuantizeActivity()
(in
Composite
)
QuantTreeNode
(in
rdkit.ML.DecTree.QuantTree
)
QuickReport
(in
rdkit.Dbase.DbReport
)
QuantizeExample()
(in
Composite
)
queryBase
(in
rdkit.Dbase.Pubmed.QueryParams
)
QuickSmartsMatch()
(in
rdkit.Chem
)
R
R2()
(in
rdkit.ML.Data.Stats
)
RecapDecompose()
(in
rdkit.Chem.Recap
)
Reset()
(in
ThresholdScreener
)
radCol
(in
rdkit.Chem.MolSurf
)
RecapHierarchyNode
(in
rdkit.Chem.Recap
)
Reset()
(in
TopNScreener
)
radicalSymbol
(in
DrawingOptions
)
Record
(in
rdkit.Dbase.Pubmed.Records
)
Reset()
(in
ForwardDbMolSupplier
)
radius
(in
FeatMapParams
)
Records
(in
rdkit.Dbase.Pubmed
)
Reset()
(in
RandomAccessDbMolSupplier
)
random()
(in
RDRandom
)
RecordsToPubmedText()
(in
rdkit.Dbase.Pubmed.PubmedUtils
)
Reset()
(in
MolSupplier
)
RandomAccessDbFpSupplier
(in
rdkit.Chem.Fingerprints.DbFpSupplier
)
Redraw()
(in
MolViewer
)
Reset()
(in
VectCollection
)
RandomAccessDbMolSupplier
(in
rdkit.Chem.Suppliers.DbMolSupplier
)
Redraw()
(in
MolViewer
)
Reset()
(in
DbResultBase
)
RandomAccessDbResultSet
(in
rdkit.Dbase.DbResultSet
)
ReFile
(in
rdkit.ML.files
)
Reset()
(in
DbResultSet
)
Randomize
(in
rdkit.Chem
)
RegisterItem()
(in
rdkit.Dbase.StorageUtils
)
Reset()
(in
RandomAccessDbResultSet
)
RandomizeActivities()
(in
rdkit.ML.Data.DataUtils
)
RegisterItems()
(in
rdkit.Dbase.StorageUtils
)
reset()
(in
VLibNode
)
RandomizeMol()
(in
rdkit.Chem.Randomize
)
RegisterSchema()
(in
rdkit.Chem.MolDb.Loader_sa
)
reset()
(in
DbMolSupplyNode
)
RandomizeMolBlock()
(in
rdkit.Chem.Randomize
)
removalReaction
(in
FGHierarchyNode
)
reset()
(in
DbPickleSupplyNode
)
range_pat
(in
rdkit.Chem.fmcs.fmcs
)
remove_unknown_bondtypes()
(in
rdkit.Chem.fmcs.fmcs
)
reset()
(in
SDSupplyNode
)
RankBits()
(in
rdkit.ML.InfoTheory.BitRank
)
RemoveChild()
(in
Cluster
)
reset()
(in
DupeFilter
)
RDIdToInt()
(in
rdkit.Dbase.StorageUtils
)
RemoveChild()
(in
VLibNode
)
reset()
(in
OutputNode
)
RDImageTransformer
(in
rdkit.Dbase.DbReport
)
RemoveParent()
(in
VLibNode
)
reset()
(in
SmilesSupplyNode
)
rdkitFpParams
(in
rdkit.Chem.Fraggle.FraggleSim
)
remover
(in
rdkit.Chem.PandasTools
)
reset()
(in
SupplyNode
)
RDRandom
remover
(in
rdkit.VLib.NodeLib.demo
)
ResetTree()
(in
rdkit.ML.DecTree.TreeVis
)
rdSimDivPickers
(in
rdkit.SimDivFilters
)
RemoveSaltsFromFrame()
(in
rdkit.Chem.PandasTools
)
restore_isotopes()
(in
rdkit.Chem.fmcs.fmcs
)
RDTestDatabase
(in
rdkit.Dbase.DbModule
)
RenderImagesInAllDataFrames()
(in
rdkit.Chem.PandasTools
)
reverse()
(in
TopNContainer
)
reactionDefs
(in
rdkit.Chem.BRICS
)
ReplaceChildIndex()
(in
TreeNode
)
reverseReactions
(in
rdkit.Chem.BRICS
)
reactionDefs
(in
rdkit.Chem.Recap
)
ReplaceGroup()
(in
rdkit.Chem.Pharm3D.EmbedLib
)
rewind()
(in
ReFile
)
reactions
(in
rdkit.Chem.BRICS
)
report()
(in
VerboseCachingTargetsMatcher
)
RingCount
(in
rdkit.Chem.Lipinski
)
reactions
(in
rdkit.Chem.Recap
)
report()
(in
VerboseHeapOps
)
ringMatchesRingOnly
(in
Default
)
ReactionToImage()
(in
rdkit.Chem.Draw
)
ReportLabImageTransformer
(in
rdkit.Dbase.DbReport
)
Risk
(in
rdkit.ML.SLT
)
ReadDataFile()
(in
rdkit.ML.files
)
rerank()
(in
rdkit.Chem.fmcs.fmcs
)
RotatableBondSmarts
(in
rdkit.Chem.Lipinski
)
ReadGeneralExamples()
(in
rdkit.ML.Data.DataUtils
)
rescalePt()
(in
Canvas
)
RunDetails
(in
rdkit.Chem.BuildFragmentCatalog
)
readline()
(in
ReFile
)
Resemblance
(in
rdkit.ML.Cluster
)
RunIt()
(in
rdkit.ML.BuildComposite
)
readlines()
(in
ReFile
)
reset()
(in
FastSDMolSupplier
)
runIt()
(in
rdkit.ML.Data.FindQuantBounds
)
ReadQuantExamples()
(in
rdkit.ML.Data.DataUtils
)
reset()
(in
ForwardDbFpSupplier
)
RunOnData()
(in
rdkit.ML.BuildComposite
)
ReadVars()
(in
rdkit.ML.Data.DataUtils
)
reset()
(in
RandomAccessDbFpSupplier
)
rxnSmarts
(in
FGHierarchyNode
)
Recap
(in
rdkit.Chem
)
Reset()
(in
SimilarityScreener
)
S
SaltRemover
(in
rdkit.Chem
)
SetInputOrder()
(in
Composite
)
SkeletonPoint
(in
rdkit.Chem.Subshape.SubshapeObjects
)
SaltRemover
(in
rdkit.Chem.SaltRemover
)
SetInputs()
(in
NetNode
)
skelPts
(in
ShapeWithSkeleton
)
salts
(in
SaltRemover
)
SetLabel()
(in
TreeNode
)
SLINK
(in
rdkit.ML.Cluster.Murtagh
)
salts
(in
rdkit.VLib.NodeLib.demo
)
SetLevel()
(in
TreeNode
)
SlogP_VSA_
(in
rdkit.Chem.MolSurf
)
SampleSubshape()
(in
SubshapeBuilder
)
setLowerBound()
(in
Pharmacophore
)
SLT
(in
rdkit.ML
)
sanitize
(in
FastSDMolSupplier
)
setLowerBound2D()
(in
Pharmacophore
)
smaFilter
(in
rdkit.VLib.NodeLib.demo
)
SATIS
(in
rdkit.Chem
)
SetMetric()
(in
Cluster
)
smarts
(in
FGHierarchyNode
)
SATISTypes()
(in
rdkit.Chem.SATIS
)
SetMetricFromName()
(in
FingerprinterDetails
)
SmartsFilter
(in
rdkit.VLib.NodeLib.SmartsMolFilter
)
save()
(in
Canvas
)
SetModel()
(in
Composite
)
smartsGps
(in
rdkit.Chem.BRICS
)
save_atom_classes()
(in
rdkit.Chem.fmcs.fmcs
)
SetModel()
(in
ModelPackage
)
SmartsMolFilter
(in
rdkit.VLib.NodeLib
)
save_isotopes()
(in
rdkit.Chem.fmcs.fmcs
)
SetModelFilterData()
(in
Composite
)
smartsPatts
(in
rdkit.Chem.MACCSkeys
)
SaveSMILESFromFrame()
(in
rdkit.Chem.PandasTools
)
SetName()
(in
Cluster
)
SmartsRemover
(in
rdkit.VLib.NodeLib
)
SaveState()
(in
DescriptorCalculator
)
SetName()
(in
TreeNode
)
SmartsRemover
(in
rdkit.VLib.NodeLib.SmartsRemover
)
SaveState()
(in
MolecularDescriptorCalculator
)
SetName()
(in
KNNModel
)
smiCol
(in
RunDetails
)
SaveXlsxFromFrame()
(in
rdkit.Chem.PandasTools
)
SetName()
(in
NaiveBayesClassifier
)
smiles
(in
RecapHierarchyNode
)
ScaffoldPasses()
(in
rdkit.Chem.Pharm2D.Utils
)
SetNegate()
(in
FilterNode
)
SmilesDupeFilter
(in
rdkit.VLib.NodeLib
)
Scaffolds
(in
rdkit.Chem
)
SetNodeScales()
(in
rdkit.ML.DecTree.TreeVis
)
smilesOut()
(in
OutputNode
)
scaleAndCenter()
(in
MolDrawing
)
SetNotes()
(in
ModelPackage
)
SmilesOutput
(in
rdkit.VLib.NodeLib
)
ScoreFeats()
(in
FeatMap
)
SetParent()
(in
TreeNode
)
SmilesSupply
(in
rdkit.VLib.NodeLib
)
ScoreFromLists()
(in
rdkit.Chem.BuildFragmentCatalog
)
SetPosition()
(in
Cluster
)
SmilesSupplyNode
(in
rdkit.VLib.NodeLib.SmilesSupply
)
scoreMode
(in
FeatMap
)
SetProbe()
(in
SimilarityScreener
)
smis
(in
rdkit.VLib.NodeLib.demo
)
ScoreMolecules()
(in
rdkit.Chem.BuildFragmentCatalog
)
SetProp()
(in
PropertyMol
)
SMR_VSA_
(in
rdkit.Chem.MolSurf
)
scoresName
(in
RunDetails
)
SetQuantBounds()
(in
Composite
)
SortModels()
(in
Composite
)
ScoreWithIndex()
(in
BitEnsemble
)
SetQuantBounds()
(in
QuantTreeNode
)
SortTrees()
(in
Forest
)
ScoreWithOnBits()
(in
BitEnsemble
)
setRadius()
(in
ExplicitPharmacophore
)
SparseBitVect
(in
rdkit.DataStructs.BitVect
)
Scoring
(in
rdkit.ML
)
SetSupplementalData()
(in
ModelPackage
)
SparseIntVect
(in
rdkit.DataStructs
)
Scoring
(in
rdkit.ML.Scoring
)
SetTerminal()
(in
TreeNode
)
SparseRankBits()
(in
rdkit.ML.InfoTheory.BitRank
)
ScreenComposite
(in
rdkit.ML
)
SetTestExamples()
(in
DecTreeNode
)
specialCases
(in
rdkit.Chem.SATIS
)
ScreenFingerprints()
(in
rdkit.Chem.Fingerprints.MolSimilarity
)
SetTestExamples()
(in
KNNModel
)
SPHERE
(in
rdkit.Chem.Features.ShowFeats
)
ScreenFromDetails()
(in
rdkit.Chem.Fingerprints.MolSimilarity
)
SetTestExamples()
(in
NaiveBayesClassifier
)
spingCanvas
(in
rdkit.Chem.Draw
)
ScreenFromDetails()
(in
rdkit.ML.ScreenComposite
)
SetTrainingExamples()
(in
DecTreeNode
)
SplitData
(in
rdkit.ML.Data
)
ScreenInDb()
(in
rdkit.Chem.Fingerprints.MolSimilarity
)
SetTrainingExamples()
(in
KNNModel
)
SplitDataSet()
(in
rdkit.ML.Data.SplitData
)
ScreenIt()
(in
rdkit.ML.ScreenComposite
)
SetTrainingExamples()
(in
NaiveBayesClassifier
)
SplitDbData()
(in
rdkit.ML.Data.SplitData
)
ScreenModel()
(in
rdkit.ML.EnrichPlot
)
SetTree()
(in
Forest
)
splitExpr
(in
rdkit.Chem.FeatFinderCLI
)
ScreenToHtml()
(in
rdkit.ML.ScreenComposite
)
setUp()
(in
TestCase
)
SplitIndices()
(in
rdkit.ML.Data.SplitData
)
scriptPattern
(in
rdkit.Chem.Draw.cairoCanvas
)
setUpperBound()
(in
Pharmacophore
)
SplitIntoNClusters()
(in
rdkit.ML.Cluster.ClusterUtils
)
SDFToCSV
(in
rdkit.Chem.ChemUtils
)
setUpperBound2D()
(in
Pharmacophore
)
SpreadPicker
(in
rdkit.SimDivFilters.SimilarityPickers
)
SDSupply
(in
rdkit.VLib.NodeLib
)
SetWeights()
(in
NetNode
)
sqlBinTypes
(in
rdkit.Dbase.DbInfo
)
SDSupplyNode
(in
rdkit.VLib.NodeLib.SDSupply
)
shader_3d
(in
rdkit.Chem.Draw.IPythonConsole
)
sqlBinTypes
(in
rdkit.Dbase.DbModule
)
searchableFields
(in
rdkit.Dbase.Pubmed.QueryParams
)
shapeDirs
(in
SkeletonPoint
)
sqlFloatTypes
(in
rdkit.Dbase.DbInfo
)
searchableFieldsOrder
(in
rdkit.Dbase.Pubmed.QueryParams
)
shapeDist
(in
SubshapeAlignment
)
sqlFloatTypes
(in
rdkit.Dbase.DbModule
)
searchBase
(in
rdkit.Dbase.Pubmed.QueryParams
)
shapeDistTol
(in
SubshapeAligner
)
sqlIntTypes
(in
rdkit.Dbase.DbInfo
)
Searches
(in
rdkit.Dbase.Pubmed
)
shapeMoments
(in
SkeletonPoint
)
sqlIntTypes
(in
rdkit.Dbase.DbModule
)
searchLayerFlags
(in
LayeredOptions
)
shapes
(in
SubshapeShape
)
sqlTextTypes
(in
rdkit.Dbase.DbInfo
)
Select()
(in
Displayable
)
ShapeWithSkeleton
(in
rdkit.Chem.Subshape.SubshapeObjects
)
sqlTextTypes
(in
rdkit.Dbase.DbModule
)
select_fragments()
(in
rdkit.Chem.Fraggle.FraggleSim
)
shift_targets()
(in
CachingTargetsMatcher
)
Standardize
(in
rdkit.ML.Cluster
)
SelectAtoms()
(in
MolViewer
)
shift_targets()
(in
VerboseCachingTargetsMatcher
)
StandardizeMatrix()
(in
rdkit.ML.Data.Stats
)
SelectAtoms()
(in
MolViewer
)
Show()
(in
Displayable
)
starting_from
(in
rdkit.Chem.fmcs.fmcs
)
selectColor
(in
DrawingOptions
)
ShowArrow()
(in
rdkit.Chem.Features.ShowFeats
)
Stats
(in
rdkit.ML.Data
)
SelectProteinNeighborhood()
(in
MolViewer
)
ShowDescriptors()
(in
DescriptorCalculator
)
StdDev()
(in
rdkit.ML.Cluster.Standardize
)
SelectProteinNeighborhood()
(in
MolViewer
)
ShowDetails()
(in
rdkit.Chem.BuildFragmentCatalog
)
stepSize
(in
SubshapeBuilder
)
SeqTypes
(in
rdkit.ML.Data.SplitData
)
ShowFeats
(in
rdkit.Chem.Features
)
StepUpdate()
(in
BackProp
)
set_isotopes()
(in
rdkit.Chem.fmcs.fmcs
)
ShowMetricMat()
(in
rdkit.ML.Cluster.Resemblance
)
StorageUtils
(in
rdkit.Dbase
)
SetActivityQuantBounds()
(in
Composite
)
ShowMol()
(in
MolViewer
)
Store()
(in
CompositeRun
)
SetBadExamples()
(in
DecTreeNode
)
ShowMol()
(in
rdkit.Chem.Draw
)
StripMol()
(in
SaltRemover
)
SetBadExamples()
(in
KNNClassificationModel
)
ShowMol()
(in
MolViewer
)
structure_format_functions
(in
rdkit.Chem.fmcs.fmcs
)
SetBadExamples()
(in
KNNRegressionModel
)
ShowMolFeats()
(in
rdkit.Chem.Features.ShowFeats
)
Subgraph
(in
rdkit.Chem.fmcs.fmcs
)
SetBadExamples()
(in
NaiveBayesClassifier
)
ShowMols
(in
rdkit.Chem
)
subgraph_to_fragment()
(in
rdkit.Chem.fmcs.fmcs
)
SetBins()
(in
SigFactory
)
ShowOnly()
(in
Displayable
)
Subshape
(in
rdkit.Chem
)
SetBits()
(in
BitEnsemble
)
ShowStats()
(in
rdkit.ML.AnalyzeComposite
)
SubshapeAligner
(in
rdkit.Chem.Subshape
)
SetCalculator()
(in
ModelPackage
)
showUnknownDoubleBonds
(in
DrawingOptions
)
SubshapeAligner
(in
rdkit.Chem.Subshape.SubshapeAligner
)
SetClusters()
(in
BitClusterer
)
ShowVersion()
(in
rdkit.ML.BuildComposite
)
SubshapeAlignment
(in
rdkit.Chem.Subshape.SubshapeAligner
)
SetCount()
(in
Composite
)
ShowVersion()
(in
rdkit.ML.GrowComposite
)
SubshapeBuilder
(in
rdkit.Chem.Subshape
)
SetCount()
(in
Forest
)
ShowVersion()
(in
rdkit.ML.ScreenComposite
)
SubshapeBuilder
(in
rdkit.Chem.Subshape.SubshapeBuilder
)
SetData()
(in
FeatMapParser
)
ShowVoteResults()
(in
rdkit.ML.ScreenComposite
)
SubshapeCombineOperations
(in
rdkit.Chem.Subshape.SubshapeBuilder
)
SetData()
(in
Cluster
)
SigFactory
(in
rdkit.Chem.Pharm2D
)
SubshapeDistanceMetric
(in
rdkit.Chem.Subshape.SubshapeAligner
)
SetData()
(in
TreeNode
)
SigFactory
(in
rdkit.Chem.Pharm2D.SigFactory
)
SubshapeObjects
(in
rdkit.Chem.Subshape
)
SetDataset()
(in
ModelPackage
)
Sigmoid
(in
rdkit.ML.Neural.ActFuncs
)
SubshapeShape
(in
rdkit.Chem.Subshape.SubshapeObjects
)
SetDataTuple()
(in
Composite
)
SigTree
(in
rdkit.ML.DecTree
)
Sum
(in
DirMergeMode
)
SetDataTuple()
(in
Forest
)
SigTreeBuilder()
(in
rdkit.ML.DecTree.BuildSigTree
)
SUM
(in
SubshapeCombineOperations
)
SetDefaults()
(in
rdkit.ML.BuildComposite
)
SigTreeNode
(in
rdkit.ML.DecTree.SigTree
)
Sum()
(in
pySparseIntVect
)
SetDefaults()
(in
rdkit.ML.CompositeRun
)
SimDivFilters
(in rdkit)
SUM()
(in
CompoundDescriptorCalculator
)
SetDefaults()
(in
rdkit.ML.GrowComposite
)
similarityFunctions
(in
rdkit.DataStructs
)
SUM()
(in
rdkit.ML.Descriptors.Parser
)
SetDefaults()
(in
rdkit.ML.ScreenComposite
)
SimilarityMaps
(in
rdkit.Chem.Draw
)
summaryBase
(in
rdkit.Dbase.Pubmed.QueryParams
)
SetDescriptorNames()
(in
Composite
)
similarityMethods
(in
rdkit.Chem.MolDb.FingerprintUtils
)
SummaryRecord
(in
rdkit.Dbase.Pubmed.Records
)
SetDisplayStyle()
(in
MolViewer
)
SimilarityPickers
(in
rdkit.SimDivFilters
)
suppl
(in
FastSDMolSupplier
)
SetDisplayStyle()
(in
MolViewer
)
SimilarityScreener
(in
rdkit.Chem.Fingerprints
)
supplier
(in
rdkit.VLib.NodeLib.demo
)
SetDisplayUpdate()
(in
MolViewer
)
SimilarityScreener
(in
rdkit.Chem.Fingerprints.SimilarityScreener
)
SupplierFromDetails()
(in
rdkit.Chem.BuildFragmentCatalog
)
SetDisplayUpdate()
(in
MolViewer
)
SimpleEnum
(in
rdkit.Chem
)
SupplierFromFilename()
(in
rdkit.Chem
)
SetError()
(in
Composite
)
SingleBestAtoms
(in
rdkit.Chem.fmcs.fmcs
)
Suppliers
(in
rdkit.Chem
)
SetError()
(in
Forest
)
SingleBestAtomsCompleteRingsOnly
(in
rdkit.Chem.fmcs.fmcs
)
Supply
(in
rdkit.VLib
)
SetExamples()
(in
DecTreeNode
)
SingleBestBonds
(in
rdkit.Chem.fmcs.fmcs
)
SupplyNode
(in
rdkit.VLib.Supply
)
SetExamples()
(in
KNNModel
)
SingleBestBondsCompleteRingsOnly
(in
rdkit.Chem.fmcs.fmcs
)
supportedSimilarityMethods
(in
rdkit.Chem.MolDb.FingerprintUtils
)
SetExamples()
(in
NaiveBayesClassifier
)
size
(in
Font
)
SetIndex()
(in
Cluster
)
size
(in
pySparseIntVect
)
T
tableName
(in
RunDetails
)
TestSupplier()
(in
rdkit.Chem.ChemUtils.BulkTester
)
TrainOnLine()
(in
BackProp
)
TakeEnsemble()
(in
rdkit.ML.Data.DataUtils
)
TestTree()
(in
rdkit.ML.DecTree.BuildQuantTree
)
transform
(in
SubshapeAlignment
)
TanH
(in
rdkit.ML.Neural.ActFuncs
)
TextFileToData()
(in
rdkit.ML.Data.DataUtils
)
Transform
(in
rdkit.VLib
)
TANIMOTO
(in
SubshapeDistanceMetric
)
TextFileToDatabase()
(in
rdkit.Dbase.DbUtils
)
transform()
(in
SmartsRemover
)
TanimotoDist()
(in
rdkit.ML.KNN.DistFunctions
)
TextToData()
(in
rdkit.ML.Data.DataUtils
)
TransformMol()
(in
rdkit.Chem.AllChem
)
TanimotoSimilarity()
(in
BitVect
)
ThresholdScreener
(in
rdkit.Chem.Fingerprints.SimilarityScreener
)
TransformMol()
(in
rdkit.Chem.Subshape.SubshapeAligner
)
targetTri
(in
SubshapeAlignment
)
tiebreaker
(in
rdkit.Chem.fmcs.fmcs
)
TransformNode
(in
rdkit.VLib.Transform
)
tConfs
(in
rdkit.ML.Data.Stats
)
timeout
(in
Default
)
transformPoint()
(in
MolDrawing
)
tearDown()
(in
TestCase
)
timeoutString
(in
Default
)
TransformPoints()
(in
rdkit.ML.Data.Stats
)
TemplateAlign
(in
rdkit.Chem
)
Timer
(in
rdkit.Chem.fmcs.fmcs
)
Transforms
(in
rdkit.ML.Data
)
TemplateExpand
(in
rdkit.Chem.ChemUtils
)
tkLabel
(in
rdkit.Chem.Draw
)
Tree
(in
rdkit.ML.DecTree
)
terminalColors
(in
VisOpts
)
tkPI
(in
rdkit.Chem.Draw
)
TreeNode
(in
rdkit.ML.DecTree.Tree
)
terminalEmptyColor
(in
VisOpts
)
tkRoot
(in
rdkit.Chem.Draw
)
TreeUtils
(in
rdkit.ML.DecTree
)
terminalEmptyColor
(in
VisOpts
)
topMargin
(in
VisOpts
)
TreeVis
(in
rdkit.ML.DecTree
)
terminalOffColor
(in
VisOpts
)
topN
(in
RunDetails
)
Triangle
(in
FeatProfile
)
terminalOffColor
(in
VisOpts
)
TopNContainer
(in
rdkit.DataStructs
)
TRIANGLE_FAN
(in
rdkit.Chem.Features.ShowFeats
)
terminalOnColor
(in
VisOpts
)
TopNContainer
(in
rdkit.DataStructs.TopNContainer
)
triangleRMSTol
(in
SubshapeAligner
)
terminalOnColor
(in
VisOpts
)
TopNOverallPicker
(in
rdkit.SimDivFilters.SimilarityPickers
)
triangleSSD
(in
SubshapeAlignment
)
terminalPtRadScale
(in
SubshapeBuilder
)
TopNScreener
(in
rdkit.Chem.Fingerprints.SimilarityScreener
)
trigger_report()
(in
VerboseHeapOps
)
test1()
(in
TestCase
)
TorsionFingerprints
(in
rdkit.Chem
)
tTable
(in
rdkit.ML.Data.Stats
)
test2()
(in
TestCase
)
Torsions
(in
rdkit.Chem.AtomPairs
)
ttDict
(in
rdkit.Chem.Draw.SimilarityMaps
)
testall()
(in
rdkit.ML.BuildComposite
)
toXML()
(in
Record
)
type()
(in
KNNClassificationModel
)
TestCase
(in
rdkit.Chem.ChemUtils.SDFToCSV
)
TPSA
(in
rdkit.Chem.MolSurf
)
type()
(in
KNNRegressionModel
)
TestMolecule()
(in
rdkit.Chem.ChemUtils.BulkTester
)
Train()
(in
BayesComposite
)
TypeAtoms()
(in
rdkit.Chem.EState.AtomTypes
)
TestQuantTree()
(in
rdkit.ML.DecTree.BuildQuantTree
)
Trainer
(in
rdkit.ML.Neural.Trainers
)
TypedFragment
(in
rdkit.Chem.fmcs.fmcs
)
TestQuantTree2()
(in
rdkit.ML.DecTree.BuildQuantTree
)
Trainers
(in
rdkit.ML.Neural
)
TypedMolecule
(in
rdkit.Chem.fmcs.fmcs
)
TestRun()
(in
rdkit.ML.DecTree.CrossValidate
)
trainModel()
(in
NaiveBayesClassifier
)
TypeFinder()
(in
rdkit.Dbase.DbUtils
)
U
UninstallIPythonRenderer()
(in
rdkit.Chem.Draw.IPythonConsole
)
urlBase
(in
rdkit.Dbase.Pubmed.QueryParams
)
Usage()
(in
rdkit.ML.GrowComposite
)
UNION
(in
SubshapeCombineOperations
)
Usage()
(in
rdkit.Chem.BuildFragmentCatalog
)
Usage()
(in
rdkit.ML.MLUtils.VoteImg
)
Uniquer
(in
rdkit.Chem.fmcs.fmcs
)
Usage()
(in
rdkit.Chem.ChemUtils.SDFToCSV
)
Usage()
(in
rdkit.ML.ScreenComposite
)
Uniquify()
(in
VectCollection
)
Usage()
(in
rdkit.Chem.ChemUtils.TemplateExpand
)
useFraction
(in
DrawingOptions
)
UniquifyCombinations()
(in
rdkit.Chem.Pharm2D.Utils
)
Usage()
(in
rdkit.Chem.Fingerprints.FingerprintMols
)
UseLarger
(in
MergeMethod
)
UpdateFromSequence()
(in
pySparseIntVect
)
Usage()
(in
rdkit.ML.AnalyzeComposite
)
Utils
(in
rdkit.Chem.AtomPairs
)
UpdatePharmacophoreBounds()
(in
rdkit.Chem.Pharm3D.EmbedLib
)
Usage()
(in
rdkit.ML.BuildComposite
)
Utils
(in
rdkit.Chem.Pharm2D
)
UpdateTableNames()
(in
DbConnect
)
Usage()
(in
rdkit.ML.Data.FindQuantBounds
)
UPGMA
(in
rdkit.ML.Cluster.Murtagh
)
Usage()
(in
rdkit.ML.EnrichPlot
)
V
v
(in
rdkit.Chem.PandasTools
)
VERTEX
(in
rdkit.Chem.Features.ShowFeats
)
VLib
(in rdkit)
ValidateRDId()
(in
rdkit.Dbase.StorageUtils
)
vertOffset
(in
VisOpts
)
VLibNode
(in
rdkit.VLib.Node
)
value_pat
(in
rdkit.Chem.fmcs.fmcs
)
vertOffset
(in
VisOpts
)
VoteAndBuildImage()
(in
rdkit.ML.MLUtils.VoteImg
)
VectCollection
(in
rdkit.DataStructs
)
VisOpts
(in
rdkit.DataStructs.HierarchyVis
)
VoteImg
(in
rdkit.ML.MLUtils
)
VectCollection
(in
rdkit.DataStructs.VectCollection
)
visOpts
(in
rdkit.DataStructs.HierarchyVis
)
VSA_EState_()
(in
rdkit.Chem.EState.EState_VSA
)
VerboseCachingTargetsMatcher
(in
rdkit.Chem.fmcs.fmcs
)
VisOpts
(in
rdkit.ML.Cluster.ClusterVis
)
vsaBins
(in
rdkit.Chem.EState.EState_VSA
)
VerboseHeapOps
(in
rdkit.Chem.fmcs.fmcs
)
VisOpts
(in
rdkit.ML.DecTree.TreeVis
)
vers
(in
rdkit.Dbase.Pubmed.Records
)
visOpts
(in
rdkit.ML.DecTree.TreeVis
)
W
WARDS
(in
rdkit.ML.Cluster.Murtagh
)
weight
(in
FeatMapPoint
)
WriteData()
(in
rdkit.ML.Data.DataUtils
)
warning()
(in
rdkit.Chem.Fingerprints.DbFpSupplier
)
WeightedAverage
(in
MergeMethod
)
WritePickledData()
(in
rdkit.ML.Data.DataUtils
)
warning()
(in
rdkit.Chem.Suppliers.DbMolSupplier
)
width
(in
FeatMapParams
)
WriteSDF()
(in
rdkit.Chem.PandasTools
)
wedgeDashedBonds
(in
DrawingOptions
)
winRad
(in
SubshapeBuilder
)
weight
(in
Font
)
wordSize
(in
LayeredOptions
)
X
xOffset
(in
VisOpts
)
Y
yOffset
(in
VisOpts
)
Z
Zoom()
(in
MolViewer
)
Zoom()
(in
MolViewer
)
_
__add__()
(in
pySparseIntVect
)
__or__()
(in
pySparseIntVect
)
_GetTetrahedralFeatVect()
(in
rdkit.Chem.Features.FeatDirUtilsRD
)
__and__()
(in
BitVect
)
__package__
(in
RDRandom
)
_getTorsionAtomPositions()
(in
rdkit.Chem.TorsionFingerprints
)
__and__()
(in
pySparseIntVect
)
__package__
(in
rdkit.Avalon
)
_getVectNormal()
(in
rdkit.Chem.Features.ShowFeats
)
__call__()
(in
SaltRemover
)
__package__
(in
rdkit.DataManip
)
_globalArrowCGO
(in
rdkit.Chem.Features.ShowFeats
)
__call__()
(in
SubshapeAligner
)
__package__
(in
rdkit.Dbase.DbReport
)
_globalSphereCGO
(in
rdkit.Chem.Features.ShowFeats
)
__call__()
(in
SubshapeBuilder
)
__package__
(in
rdkit.Dbase.Pubmed.PubmedUtils
)
_greet
(in
rdkit.Chem.ChemUtils.TemplateExpand
)
__call__()
(in
CDXImageTransformer
)
__package__
(in
rdkit.Dbase.Pubmed.QueryParams
)
_HasSubstructMatchStr
(in
rdkit.Chem
)
__call__()
(in
CactvsImageTransformer
)
__package__
(in
rdkit.Dbase.Pubmed.Records
)
_HeightFirstSplit()
(in
rdkit.ML.Cluster.ClusterUtils
)
__call__()
(in
RDImageTransformer
)
__package__
(in
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rdkit.VLib.NodeLib
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FeatMapParser
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Canvas
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Canvas
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Canvas
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MCSResult
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FastSDMolSupplier
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BitVect
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FeatMapParser
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MolDrawing
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FeatMap
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DbFpSupplier
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PropertyMol
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GenericPicker
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RandomAccessDbFpSupplier
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FeatMap
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MCSResult
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ExplicitPharmacophore
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ThresholdScreener
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TopNScreener
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MCSResult
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TreeNode
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Network
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SigFactory
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CachingTargetsMatcher
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BitVect
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MCSResult
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Timer
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DbMolSupplier
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KNNModel
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DbConnect
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MLDataSet
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MLQuantDataSet
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CactvsImageTransformer
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RDImageTransformer
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ReportLabImageTransformer
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rdkit.ML.Descriptors.Parser
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JournalArticleRecord
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rdkit.Chem.Descriptors
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LinkRecord
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Record
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MLDataSet
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MLQuantDataSet
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NaiveBayesClassifier
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CompoundDescriptorCalculator
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rdkit.Chem.MCS
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MolecularDescriptorCalculator
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rdkit.Chem.Pharm2D.Utils
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rdkit.Chem.Pharm3D.EmbedLib
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KNNClassificationModel
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rdkit.Chem.PropertyMol
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__init__()
(in
KNNModel
)
_cvsVersion
(in
rdkit.Chem.BuildFragmentCatalog
)
_test()
(in
rdkit.Chem.SaltRemover
)
__init__()
(in
KNNRegressionModel
)
_cvsVersion
(in
rdkit.Chem.Fingerprints.ClusterMols
)
_test()
(in
rdkit.Chem.Scaffolds.MurckoScaffold
)
__init__()
(in
ModelPackage
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_cvsVersion
(in
rdkit.Chem.Fingerprints.FingerprintMols
)
_test()
(in
rdkit.Chem.SimpleEnum.Enumerator
)
__init__()
(in
NaiveBayesClassifier
)
_cvsVersion
(in
rdkit.Chem.Fingerprints.MolSimilarity
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_test()
(in
rdkit.Chem.TemplateAlign
)
__init__()
(in
Sigmoid
)
_dataSeq
(in
rdkit.Chem.Fingerprints.MolSimilarity
)
_test()
(in
rdkit.Chem
)
__init__()
(in
TanH
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_dataSeq
(in
rdkit.VLib.NodeLib.DbPickleSupplier
)
_test()
(in
rdkit.DataStructs.BitUtils
)
__init__()
(in
NetNode
)
_debug
(in
rdkit.Chem.SATIS
)
_test()
(in
rdkit.DataStructs.LazySignature
)
__init__()
(in
Network
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_descList
(in
rdkit.Chem.Descriptors
)
_test()
(in
rdkit.DataStructs.SparseIntVect
)
__init__()
(in
BackProp
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_details
(in
rdkit.Dbase.Pubmed.QueryParams
)
_test()
(in
rdkit.DataStructs.VectCollection
)
__init__()
(in
ReFile
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_details
(in
rdkit.ML.ScreenComposite
)
_test()
(in
rdkit.Dbase.Pubmed.PubmedUtils
)
__init__()
(in
SpreadPicker
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_displaySubshapeSkelPt()
(in
rdkit.Chem.Subshape.SubshapeObjects
)
_test()
(in
rdkit.Dbase.Pubmed.Searches
)
__init__()
(in
TopNOverallPicker
)
_doLine()
(in
Canvas
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_test()
(in
rdkit.Dbase.StorageUtils
)
__init__()
(in
FilterNode
)
_doLine()
(in
Canvas
)
_test()
(in
rdkit.ML.Data.DataUtils
)
__init__()
(in
VLibNode
)
_doMatch()
(in
rdkit.Chem.TorsionFingerprints
)
_test()
(in
rdkit.ML.Data.SplitData
)
__init__()
(in
DbMolSupplyNode
)
_doMatchExcept1()
(in
rdkit.Chem.TorsionFingerprints
)
_test()
(in
rdkit.ML.DecTree.TreeUtils
)
__init__()
(in
DbPickleSupplyNode
)
_doNotMatch()
(in
rdkit.Chem.TorsionFingerprints
)
_test()
(in
rdkit.ML.KNN.DistFunctions
)
__init__()
(in
_lazyDataSeq
)
_drawBond()
(in
MolDrawing
)
_test()
(in
rdkit.SimDivFilters.SimilarityPickers
)
__init__()
(in
SDSupplyNode
)
_DrawClusterTree()
(in
rdkit.ML.Cluster.ClusterVis
)
_test()
(in
rdkit.VLib.Filter
)
__init__()
(in
SmartsFilter
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_drawLabel()
(in
MolDrawing
)
_test()
(in
rdkit.VLib.Node
)
__init__()
(in
SmartsRemover
)
_DrawToLimit()
(in
ClusterRenderer
)
_test()
(in
rdkit.VLib.NodeLib.DbMolSupply
)
__init__()
(in
DupeFilter
)
_drawWedgedBond()
(in
MolDrawing
)
_test()
(in
rdkit.VLib.NodeLib.DbPickleSupplier
)
__init__()
(in
OutputNode
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_ExampleCounter()
(in
rdkit.ML.DecTree.TreeVis
)
_test()
(in
rdkit.VLib.NodeLib.SDSupply
)
__init__()
(in
SmilesSupplyNode
)
_exploder()
(in
rdkit.Chem.ChemUtils.TemplateExpand
)
_test()
(in
rdkit.VLib.NodeLib.SmartsMolFilter
)
__init__()
(in
OutputNode
)
_fact()
(in
rdkit.Chem.Pharm2D.Utils
)
_test()
(in
rdkit.VLib.NodeLib.SmartsRemover
)
__init__()
(in
SupplyNode
)
_featColors
(in
rdkit.Chem.Features.ShowFeats
)
_test()
(in
rdkit.VLib.NodeLib.SmilesDupeFilter
)
__init__()
(in
TransformNode
)
_fieldsOfInterest
(in
JournalArticleRecord
)
_test()
(in
rdkit.VLib.NodeLib.SmilesOutput
)
__invert__()
(in
BitVect
)
_fieldsOfInterest
(in
LinkRecord
)
_test()
(in
rdkit.VLib.NodeLib.SmilesSupply
)
__ior__()
(in
pySparseIntVect
)
_fieldsOfInterest
(in
SummaryRecord
)
_test()
(in
rdkit.VLib.Output
)
__isub__()
(in
pySparseIntVect
)
_findAvgVec()
(in
rdkit.Chem.Features.FeatDirUtilsRD
)
_test()
(in
rdkit.VLib.Supply
)
__iter__()
(in
FastSDMolSupplier
)
_findBinIdx
(in
SigFactory
)
_test()
(in
rdkit.VLib.Transform
)
__iter__()
(in
ThresholdScreener
)
_findCentralBond()
(in
rdkit.Chem.TorsionFingerprints
)
_test1
(in
rdkit.ML.DecTree.TreeUtils
)
__iter__()
(in
TopNScreener
)
_findHydAtoms()
(in
rdkit.Chem.Features.FeatDirUtilsRD
)
_testChain()
(in
rdkit.ML.DecTree.PruneTree
)
__iter__()
(in
MolSupplier
)
_findVersions()
(in
MolecularDescriptorCalculator
)
_testRandom()
(in
rdkit.ML.DecTree.PruneTree
)
__iter__()
(in
pySparseIntVect
)
_fingerprinter
(in
rdkit.Chem.PandasTools
)
_testSpecific()
(in
rdkit.ML.DecTree.PruneTree
)
__iter__()
(in
DbResultBase
)
_fingerprinterInit()
(in
FingerprinterDetails
)
_times
(in
rdkit.Chem.Pharm3D.EmbedLib
)
__iter__()
(in
VLibNode
)
_finish()
(in
RandomAccessDbResultSet
)
_ToClusters()
(in
rdkit.ML.Cluster.Murtagh
)
__iter__()
(in
_lazyDataSeq
)
_float_tol
(in
rdkit.ML.Data.Quantize
)
_toJSON()
(in
rdkit.Chem.Draw.IPythonConsole
)
__len__()
(in
FastSDMolSupplier
)
_gacRecurse()
(in
RecapHierarchyNode
)
_toPNG()
(in
rdkit.Chem.Draw.IPythonConsole
)
__len__()
(in
RandomAccessDbFpSupplier
)
_GenerateRandomEnsemble()
(in
rdkit.ML.DecTree.BuildSigTree
)
_toReactionPNG()
(in
rdkit.Chem.Draw.IPythonConsole
)
__len__()
(in
TopNScreener
)
_GenPoints()
(in
Cluster
)
_toSVG()
(in
rdkit.Chem.Draw.IPythonConsole
)
__len__()
(in
FGHierarchyNode
)
_GenVarTable()
(in
rdkit.ML.Data.Quantize
)
_trianglesInPharmacophore
(in
rdkit.Chem.Pharm2D.Utils
)
__len__()
(in
Generator
)
_get_image()
(in
rdkit.Chem.PandasTools
)
_update_times()
(in
rdkit.Chem.fmcs.fmcs
)
__len__()
(in
RandomAccessDbMolSupplier
)
_get_match_bond_indices()
(in
rdkit.Chem.fmcs.fmcs
)
_UpdateLength()
(in
Cluster
)
__len__()
(in
BitVect
)
_get_nth_prime()
(in
rdkit.Chem.fmcs.fmcs
)
_usage
(in
rdkit.Chem.ChemUtils.TemplateExpand
)
__len__()
(in
SparseBitVect
)
_get_symbol
(in
rdkit.Chem.fmcs.fmcs
)
_usage
(in
rdkit.Chem.Features.ShowFeats
)
__len__()
(in
LazySig
)
_get_threshold_count()
(in
rdkit.Chem.fmcs.fmcs
)
_usageDoc
(in
rdkit.Chem.Fingerprints.ClusterMols
)
__len__()
(in
pySparseIntVect
)
_getAllTriangles()
(in
rdkit.Chem.Subshape.SubshapeAligner
)
_usageDoc
(in
rdkit.Chem.Fingerprints.FingerprintMols
)
__len__()
(in
TopNContainer
)
_GetAtomContribs
(in
rdkit.Chem.Crippen
)
_usageDoc
(in
rdkit.Chem.Fingerprints.MolSimilarity
)
__len__()
(in
VectCollection
)
_getAtomInvariantsWithRadius()
(in
rdkit.Chem.TorsionFingerprints
)
_validate()
(in
_lazyDataSeq
)
__len__()
(in
RandomAccessDbResultSet
)
_getBinId()
(in
rdkit.ML.NaiveBayes.ClassificationModel
)
_verbose
(in
rdkit.Chem.Pharm2D.Generate
)
__len__()
(in
Cluster
)
_GetBitSummaryData()
(in
SigFactory
)
_verbose
(in
rdkit.Chem.Pharm2D.Matcher
)
__len__()
(in
Composite
)
_getBondAttachmentCoordinates()
(in
MolDrawing
)
_verbose
(in
rdkit.Chem.Pharm2D.SigFactory
)
__len__()
(in
Forest
)
_getBondOffset()
(in
MolDrawing
)
_verbose
(in
rdkit.Chem.Pharm2D.Utils
)
__len__()
(in
GenericPicker
)
_getCanvas()
(in
rdkit.Chem.Draw
)
_verbose
(in
rdkit.ML.BuildComposite
)
__lt__()
(in
QuantTreeNode
)
_GetCountDict()
(in
rdkit.Chem.GraphDescriptors
)
_verbose
(in
rdkit.ML.DecTree.PruneTree
)
__lt__()
(in
TreeNode
)
_getFeatDict()
(in
rdkit.Chem.Pharm3D.EmbedLib
)
_verbose
(in
rdkit.ML.GrowComposite
)
__missing__()
(in
AtomSmartsNoAromaticity
)
_getHeavyAtomNeighbors()
(in
rdkit.Chem.TorsionFingerprints
)
_version
(in
rdkit.Chem.ChemUtils.TemplateExpand
)
__missing__()
(in
CachingTargetsMatcher
)
_getIndexforTorsion()
(in
rdkit.Chem.TorsionFingerprints
)
_version
(in
rdkit.Chem.FeatFinderCLI
)
__missing__()
(in
Uniquer
)
_getLinePoints()
(in
CanvasBase
)
_version
(in
rdkit.Chem.Features.ShowFeats
)
__mul__()
(in
pySparseIntVect
)
_GetLocalError()
(in
rdkit.ML.DecTree.PruneTree
)
_VertexDegrees()
(in
rdkit.Chem.GraphDescriptors
)
__nonzero__()
(in
MCSResult
)
_getOffsetBondPts()
(in
MolDrawing
)
_welcomeMessage
(in
rdkit.Chem.Features.ShowFeats
)
__nonzero__()
(in
MCSResult
)
_GetSubstructMatch()
(in
rdkit.Chem.Draw.IPythonConsole
)
__or__()
(in
BitVect
)
_GetSubstructMatches()
(in
rdkit.Chem.Draw.IPythonConsole
)
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