Protein.
expand_degenerates
()[source]¶Yield all possible non-degenerate versions of the sequence.
State: Stable as of 0.4.0.
See also
Notes
There is no guaranteed ordering to the non-degenerate sequences that are yielded.
Each non-degenerate sequence will have the same type, metadata, and positional metadata as the biological sequence.
Examples
>>> from skbio import DNA
>>> seq = DNA('TRG')
>>> seq_generator = seq.expand_degenerates()
>>> for s in sorted(seq_generator, key=str):
... s
... print('')
DNA
-----------------------------
Stats:
length: 3
has gaps: False
has degenerates: False
has non-degenerates: True
GC-content: 33.33%
-----------------------------
0 TAG
DNA
-----------------------------
Stats:
length: 3
has gaps: False
has degenerates: False
has non-degenerates: True
GC-content: 66.67%
-----------------------------
0 TGG