picard.vcf
Classes
ByIntervalListVariantContextIterator
CallingMetricAccumulator
CallingMetricAccumulator.Result
CollectVariantCallingMetrics
CollectVariantCallingMetrics.VariantCallingDetailMetrics
CollectVariantCallingMetrics.VariantCallingSummaryMetrics
FixVcfHeader
GA4GHScheme
GA4GHSchemeWithMissingAsHomRef
GatherVcfs
GenotypeConcordance
GenotypeConcordanceContingencyMetrics
GenotypeConcordanceCounts
GenotypeConcordanceDetailMetrics
GenotypeConcordanceScheme
GenotypeConcordanceSchemeFactory
GenotypeConcordanceStates
GenotypeConcordanceStates.TruthAndCallStates
GenotypeConcordanceSummaryMetrics
GvcfMetricAccumulator
LiftoverVcf
MakeSitesOnlyVcf
MergeVcfs
PairedVariantSubContextIterator
PairedVariantSubContextIterator.VcfTuple
RenameSampleInVcf
SortVcf
SplitVcfs
UpdateVcfSequenceDictionary
VcfFormatConverter
VcfToIntervalList
Enums
GenotypeConcordanceStateCodes
GenotypeConcordanceStates.CallState
GenotypeConcordanceStates.ContingencyState
GenotypeConcordanceStates.TruthState