public class CheckTreeAccuracy
extends java.lang.Object
Constructor and Description |
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CheckTreeAccuracy() |
Modifier and Type | Method and Description |
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static DistanceMatrix |
copyMatrix(DistanceMatrix matrix) |
PhylogenyNode |
findCommonParent(PhylogenyNode node,
java.util.Set<PhylogenyNode> path) |
double |
getNodeDistance(PhylogenyNode parentNode,
PhylogenyNode childNode) |
void |
markPathToRoot(PhylogenyNode node,
java.util.Set<PhylogenyNode> path) |
void |
process(Phylogeny tree,
DistanceMatrix matrix) |
public static DistanceMatrix copyMatrix(DistanceMatrix matrix)
public void process(Phylogeny tree, DistanceMatrix matrix)
public double getNodeDistance(PhylogenyNode parentNode, PhylogenyNode childNode)
public PhylogenyNode findCommonParent(PhylogenyNode node, java.util.Set<PhylogenyNode> path)
public void markPathToRoot(PhylogenyNode node, java.util.Set<PhylogenyNode> path)