Functions | Variables

src/generic/valist.c File Reference

Class Valist methods. More...

#include "apbscfg.h"
#include "apbs/valist.h"
Include dependency graph for valist.c:

Go to the source code of this file.

Functions

VPUBLIC double Valist_getCenterX (Valist *thee)
 Get x-coordinate of molecule center.
VPUBLIC double Valist_getCenterY (Valist *thee)
 Get y-coordinate of molecule center.
VPUBLIC double Valist_getCenterZ (Valist *thee)
 Get z-coordinate of molecule center.
VPUBLIC VatomValist_getAtomList (Valist *thee)
 Get actual array of atom objects from the list.
VPUBLIC int Valist_getNumberAtoms (Valist *thee)
 Get number of atoms in the list.
VPUBLIC VatomValist_getAtom (Valist *thee, int i)
 Get pointer to particular atom in list.
VPUBLIC unsigned long int Valist_memChk (Valist *thee)
 Get total memory allocated for this object and its members.
VPUBLIC ValistValist_ctor ()
 Construct the atom list object.
VPUBLIC Vrc_Codes Valist_ctor2 (Valist *thee)
 FORTRAN stub to construct the atom list object.
VPUBLIC void Valist_dtor (Valist **thee)
 Destroys atom list object.
VPUBLIC void Valist_dtor2 (Valist *thee)
 FORTRAN stub to destroy atom list object.
VPRIVATE Vrc_Codes Valist_readPDBSerial (Valist *thee, Vio *sock, int *serial)
VPRIVATE Vrc_Codes Valist_readPDBAtomName (Valist *thee, Vio *sock, char atomName[VMAX_ARGLEN])
VPRIVATE Vrc_Codes Valist_readPDBResidueName (Valist *thee, Vio *sock, char resName[VMAX_ARGLEN])
VPRIVATE Vrc_Codes Valist_readPDBResidueNumber (Valist *thee, Vio *sock, int *resSeq)
VPRIVATE Vrc_Codes Valist_readPDBAtomCoord (Valist *thee, Vio *sock, double *coord)
VPRIVATE Vrc_Codes Valist_readPDBChargeRadius (Valist *thee, Vio *sock, double *charge, double *radius)
VPRIVATE Vrc_Codes Valist_readPDB_throughXYZ (Valist *thee, Vio *sock, int *serial, char atomName[VMAX_ARGLEN], char resName[VMAX_ARGLEN], int *resSeq, double *x, double *y, double *z)
VPRIVATE VatomValist_getAtomStorage (Valist *thee, Vatom **plist, int *pnlist, int *pnatoms)
VPRIVATE Vrc_Codes Valist_setAtomArray (Valist *thee, Vatom **plist, int nlist, int natoms)
VPUBLIC Vrc_Codes Valist_readPDB (Valist *thee, Vparam *param, Vio *sock)
 Fill atom list with information from a PDB file.
VPUBLIC Vrc_Codes Valist_readPQR (Valist *thee, Vparam *params, Vio *sock)
 Fill atom list with information from a PQR file.
VPUBLIC Vrc_Codes Valist_readXML (Valist *thee, Vparam *params, Vio *sock)
 Fill atom list with information from an XML file.
VPUBLIC Vrc_Codes Valist_getStatistics (Valist *thee)
 Load up Valist with various statistics.

Variables

VPRIVATE char * Valist_whiteChars = " \t\r\n"
VPRIVATE char * Valist_commChars = "#%"
VPRIVATE char * Valist_xmlwhiteChars = " \t\r\n<>"

Detailed Description

Class Valist methods.

Author:
Nathan Baker
Version:
Id:
valist.c 1613 2010-10-19 14:58:22Z sobolevnrm
Attention:
 *
 * APBS -- Adaptive Poisson-Boltzmann Solver
 *
 * Nathan A. Baker (nathan.baker@pnl.gov)
 * Pacific Northwest National Laboratory
 *
 * Additional contributing authors listed in the code documentation.
 *
 * Copyright (c) 2010, Pacific Northwest National Laboratory.  Portions Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyright (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regents of the University of California. Portions Copyright (c) 1995, Michael Holst.
 * All rights reserved.
 * 
 * Redistribution and use in source and binary forms, with or without
 * modification, are permitted provided that the following conditions are met: 
 *
 * -  Redistributions of source code must retain the above copyright notice, this
 * list of conditions and the following disclaimer.  
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 * - Redistributions in binary form must reproduce the above copyright notice,
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 * - Neither the name of Washington University in St. Louis nor the names of its
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Definition in file valist.c.