Functions

src/generic/pbeparm.c File Reference

Class PBEparm methods. More...

#include "apbscfg.h"
#include "apbs/pbeparm.h"
#include "apbs/vstring.h"
Include dependency graph for pbeparm.c:

Go to the source code of this file.

Functions

VPUBLIC double PBEparm_getIonCharge (PBEparm *thee, int i)
 Get charge (e) of specified ion species.
VPUBLIC double PBEparm_getIonConc (PBEparm *thee, int i)
 Get concentration (M) of specified ion species.
VPUBLIC double PBEparm_getIonRadius (PBEparm *thee, int i)
 Get radius (A) of specified ion species.
VPUBLIC double PBEparm_getzmem (PBEparm *thee)
VPUBLIC double PBEparm_getLmem (PBEparm *thee)
VPUBLIC double PBEparm_getmembraneDiel (PBEparm *thee)
VPUBLIC double PBEparm_getmemv (PBEparm *thee)
VPUBLIC PBEparmPBEparm_ctor ()
 Construct PBEparm object.
VPUBLIC int PBEparm_ctor2 (PBEparm *thee)
 FORTRAN stub to construct PBEparm object.
VPUBLIC void PBEparm_dtor (PBEparm **thee)
 Object destructor.
VPUBLIC void PBEparm_dtor2 (PBEparm *thee)
 FORTRAN stub for object destructor.
VPUBLIC int PBEparm_check (PBEparm *thee)
 Consistency check for parameter values stored in object.
VPUBLIC void PBEparm_copy (PBEparm *thee, PBEparm *parm)
 Copy PBEparm object into thee.
VPRIVATE int PBEparm_parseLPBE (PBEparm *thee, Vio *sock)
VPRIVATE int PBEparm_parseNPBE (PBEparm *thee, Vio *sock)
VPRIVATE int PBEparm_parseMOL (PBEparm *thee, Vio *sock)
VPRIVATE int PBEparm_parseLRPBE (PBEparm *thee, Vio *sock)
VPRIVATE int PBEparm_parseNRPBE (PBEparm *thee, Vio *sock)
VPRIVATE int PBEparm_parseSMPBE (PBEparm *thee, Vio *sock)
VPRIVATE int PBEparm_parseBCFL (PBEparm *thee, Vio *sock)
VPRIVATE int PBEparm_parseION (PBEparm *thee, Vio *sock)
VPRIVATE int PBEparm_parsePDIE (PBEparm *thee, Vio *sock)
VPRIVATE int PBEparm_parseSDENS (PBEparm *thee, Vio *sock)
VPRIVATE int PBEparm_parseSDIE (PBEparm *thee, Vio *sock)
VPRIVATE int PBEparm_parseSRFM (PBEparm *thee, Vio *sock)
VPRIVATE int PBEparm_parseSRAD (PBEparm *thee, Vio *sock)
VPRIVATE int PBEparm_parseSWIN (PBEparm *thee, Vio *sock)
VPRIVATE int PBEparm_parseTEMP (PBEparm *thee, Vio *sock)
VPRIVATE int PBEparm_parseUSEMAP (PBEparm *thee, Vio *sock)
VPRIVATE int PBEparm_parseCALCENERGY (PBEparm *thee, Vio *sock)
VPRIVATE int PBEparm_parseCALCFORCE (PBEparm *thee, Vio *sock)
VPRIVATE int PBEparm_parseZMEM (PBEparm *thee, Vio *sock)
VPRIVATE int PBEparm_parseLMEM (PBEparm *thee, Vio *sock)
VPRIVATE int PBEparm_parseMDIE (PBEparm *thee, Vio *sock)
VPRIVATE int PBEparm_parseMEMV (PBEparm *thee, Vio *sock)
VPRIVATE int PBEparm_parseWRITE (PBEparm *thee, Vio *sock)
VPRIVATE int PBEparm_parseWRITEMAT (PBEparm *thee, Vio *sock)
VPUBLIC int PBEparm_parseToken (PBEparm *thee, char tok[VMAX_BUFSIZE], Vio *sock)
 Parse a keyword from an input file.

Detailed Description

Class PBEparm methods.

Author:
Nathan Baker
Version:
Id:
pbeparm.c 1585 2010-05-13 16:21:17Z sdg0919
Attention:
 *
 * APBS -- Adaptive Poisson-Boltzmann Solver
 *
 * Nathan A. Baker (nathan.baker@pnl.gov)
 * Pacific Northwest National Laboratory
 *
 * Additional contributing authors listed in the code documentation.
 *
 * Copyright (c) 2010, Pacific Northwest National Laboratory.  Portions Copyright (c) 2002-2010, Washington University in St. Louis.  Portions Copyright (c) 2002-2010, Nathan A. Baker.  Portions Copyright (c) 1999-2002, The Regents of the University of California. Portions Copyright (c) 1995, Michael Holst.
 * All rights reserved.
 * 
 * Redistribution and use in source and binary forms, with or without
 * modification, are permitted provided that the following conditions are met: 
 *
 * -  Redistributions of source code must retain the above copyright notice, this
 * list of conditions and the following disclaimer.  
 * 
 * - Redistributions in binary form must reproduce the above copyright notice,
 * this list of conditions and the following disclaimer in the documentation
 * and/or other materials provided with the distribution.
 * 
 * - Neither the name of Washington University in St. Louis nor the names of its
 * contributors may be used to endorse or promote products derived from this
 * software without specific prior written permission.
 * 
 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
 * "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
 * LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
 * A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
 * CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
 * EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
 * PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
 * PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
 * LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
 * NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
 * SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 *
 * 

Definition in file pbeparm.c.