Class FixedBaseWidthScaler

    • Constructor Summary

      Constructors 
      Constructor Description
      FixedBaseWidthScaler​(float width)
      Creates a new scaler that will scale bases to the specified width without attempting to center their peaks.
      FixedBaseWidthScaler​(float width, boolean centerPeaks)
      Creates a new scaler that will scale bases to the specified width and may or may not bias the peaks to the center.
    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      float scale​(Chromatogram c, int traceSampleIndex)
      Returns the remapped coordinate for the provided trace sample index of the given chromatogram.
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • FixedBaseWidthScaler

        public FixedBaseWidthScaler​(float width)
        Creates a new scaler that will scale bases to the specified width without attempting to center their peaks.
        Parameters:
        width - the desired call width in pixels
      • FixedBaseWidthScaler

        public FixedBaseWidthScaler​(float width,
                                    boolean centerPeaks)
        Creates a new scaler that will scale bases to the specified width and may or may not bias the peaks to the center.
        Parameters:
        width - the desired call width in pixels
        centerPeaks - if true, the scaler will try to put the peak of in the center of the scaled call. Otherwise, the whole call will be scaled using the same factor.
    • Method Detail

      • scale

        public float scale​(Chromatogram c,
                           int traceSampleIndex)
                    throws java.lang.IndexOutOfBoundsException
        Description copied from interface: ChromatogramNonlinearScaler
        Returns the remapped coordinate for the provided trace sample index of the given chromatogram.
        Specified by:
        scale in interface ChromatogramNonlinearScaler
        Parameters:
        c - the Chromatogram
        traceSampleIndex - the sample index
        Returns:
        the new coordinagte
        Throws:
        java.lang.IndexOutOfBoundsException