Interface Qualitative

  • All Known Implementing Classes:
    PhredSequence

    public interface Qualitative

    Qualitative is an interface for classes wanting to hold quality data in symbolic form such as Phred scores.

    Copyright (c) 2001

    Company: AgResearch

    Since:
    1.1
    Author:
    Mark Schreiber
    • Method Detail

      • getQuality

        SymbolList getQuality()
        Retreives the list of quality symbols from the underlying object.
      • getQualityAt

        Symbol getQualityAt​(int index)
                     throws java.lang.IndexOutOfBoundsException
        Retreives the quality symbol for the specified index.
        Parameters:
        index - - Must be greater than zero.
        Throws:
        java.lang.IndexOutOfBoundsException - if index is outside of the quality symbol list.