Interface AGAVEBioSeqCallbackItf

  • All Known Implementing Classes:
    AGAVEBioSeqHandler

    public interface AGAVEBioSeqCallbackItf
    An interface that can be tested for by nested handlers when trying to do a callback. This one handles callbacks from nested elements that determine strandedness of a nesting element.
    Author:
    Hanning Ni Doubletwist Inc
    • Method Detail

      • reportFeature

        void reportFeature​(Location loc)
        Allows nesting class that manages a gene template to gain information about its extent from nested elements. Strand is reported separately as some gene features may not have strand.
      • reportDna

        void reportDna​(java.lang.String dna)